Identification and Drought Resistance Analysis of APX Gene Family in Gossypium hirsutum
CHEN Qin1,2,*, LI Duo-Lu1,*, GAO Wen-Ju1, WANG Ting-Wei1, FU Jin-Cheng1, CHEN Quan-Jia1, QU Yan-Ying1,**
1 College of Agriculture/Cotton Engineering Research Center of Ministry of Education/Key Laboratory of Agricultural Biotechnology, Xinjiang Agricultural University, Urumqi 830052, China; 2 College of Grassland and Environment Sciences, Xinjiang Agricultural University, Urumqi 830052, China
Abstract:Ascorbate peroxidase (APX) is a key enzyme for scavenging reactive oxygen species. It can catalyze the transformation of H2O2 to H2O and plays an important role in plant stress. In the early stage, the research group screened APX gene with sequence variation between drought resistant and drought sensitive materials through two-dimensional electrophoresis of root proteome of Gossypium hirsutum. In order to explore the drought resistance function of cotton APX gene, 18 GhAPXs were identified from Gossypium hirsutum genome in this study, named GhAPX01 to GhAPX18. Phylogenetic tree analysis showed that members of the GhAPX family were clustered into four subgroups; Cis-acting elements analysis showed that there were abscisic acid, salicylic acid and gibberellin elements upstream of most of the APX family genes; Transcriptome thermography and qPCR results showed that GhAPX07 and GhAPX16 were induced to express under drought stress, and showed different expression patterns in drought resistant and drought sensitive cotton materials. It was speculated that these two genes might play an important role in the response of cotton to drought stress. These results provide a reference for further study on the drought resistance function and molecular mechanism of GhAPX gene.
[1] 郭宁强. 2020. 枸杞LbAPX基因cDNA片段的克隆及生物信息学分析[J]. 生物化工, 6(03): 42-44, 49. (Guo N Q.2020. Cloning and bioinformatics analysis of cDNA fragment of LbAPX gene from Lycium barbarum L[J]. Biological Chemical, 6(03): 42-44, 49.) [2] 侯艳霞, 汤浩茹, 林源秀, 等. 2016. 基于RACE方法的草莓Faapx-c基因克隆、表达及其生物信息学分析[J]. 北方园艺, (11): 88-92. (Hou Y X, Tang H, Lin Y X, et al.2016. Cloning, expression and bioinformatic analysis of strawberry Faapx-c cDNA based on the RACE method[J]. Northern Horticulture, 2016(11): 88-92.) [3] 罗丹. 2012. 拟南芥中响应草酸胁迫的APX1基因及TMS1基因的功能分析[D]. 硕士学位论文, 福建农林大学, 导师: 王宗华, 陈晓婷, pp. 70. (Luo D.2012. Functional analysis of Apx1 and TMS1 genes responding to oxalate stress in Arabidopsis thaliana[D]. Thesis for M.S., Fujian Agriculture and Forestry University, Supervisor: Wang Z H, Chen X T, pp. 70.) [4] 李黎, 宋帅杰, 方小梅, 等. 2017. 高温干旱及复水对毛竹实生苗保护酶和脂质过氧化的影响[J].浙江农林大学学报, 34(02): 268-275. (Li L, Song S J, Fang X M, et al.2017. Protection enzymes and lipid peroxidation in Phyllostachys edulis seedlings with temperature and water stresses[J]. Journal of Zhejiang Agriculture & Forestry University, 34(2): 268-275.) [5] 乔新荣, 张继英. 2016. 植物谷胱甘肽过氧化物酶(GPX)研究进展[J]. 生物技术通报, 32(09): 7-13. (Qiao X R, Zhang J Y.2016. Research progress of plant glutathione peroxidase (GPX)[J]. Biotechnology Bulletin, 32(09): 7-13.) [6] 宋晓宏, 沙伟, 金忠民, 等. 2012. 毛尖紫萼藓GpAPX的克隆和信息学分析及其在植株干旱与复水下的表达分析[J]. 南京农业大学学报, 35(02): 51-58. (Song X H, Sha W, Jin Z M, et al.2012. Cloning and informatics analysis of GpAPX from the apical purple calyx and its expression in plants drought versus rewatering[J]. Journal of Nanjing Agricultural University, 35(02): 51-58.) [7] 孙丰磊, 张玻, 曲延英, 等. 2018. 花铃期干旱胁迫对不同棉花品种光合特性影响及抗旱性评价[J]. 干旱地区农业研究, 36(05): 7-13, 20. (Sun F L, Zhang B, Qu Y Y, et al.2018. Effects of drought stress on photosynthetic characteristics and drought resistance evaluation of different cotton varieties at flowering and boll stage[J]. Agricultural Research in Arid Area, 36(05): 7-13, 20.) [8] 王竹青, 陈云, 杨玉婷, 等. 2015. 甘蔗抗坏血酸过氧化物酶基因(ScAPX)的克隆及表达分析[J]. 农业生物技术学报, 23(02): 170-180. (Wang Z Q, Chen Y, Yang Y T, et al.2015. Cloning and expression analysis of ascorbate peroxidase gene in sugarcane (ScAPX)[J]. Journal of Agricultural Biotechnology, 23(02): 170-180.) [9] 张德超. 2013. 棉花叶片干旱胁迫蛋白的表达分析与鉴定[D]. 硕士学位论文, 中国农业科学院. 导师: 叶武威, pp. 58. (Zhang D C.2013. Expression analysis and identification of drought stress proteins in cotton leaves[D]. Thesis for M.S., Chinese Academy of Agricultural Sciences, Supervisor: Ye W W, pp. 58.) [10] Adriano S, Antonio S, Maria N, et al.2015. Ascorbate peroxidase and catalase activities and their genetic regulation in plants subjected to drought and salinity stresses[J]. International Journal of Molecular Sciences, 16(6): 13561-13578. [11] Amrina S, Insha Z, Tejpal G, et al.2019. Ectopic co-expression of the SOD and APX genes enhanced callus growth and in vitro regeneration in Arabidopsis[J]. Plant Biotechnology Reports, 13(3): 273-283. [12] Andreia C, Gisele P, Barcellos R S, et al.2012. Plant responses to stresses: Role of ascorbate peroxidase in the antioxidant protection[J]. Genetics and Molecular Biology, 35(4 suppl), 1011-1019. [13] Anjum N A, Gill S S, Gill R, et al.2014. Metal/metalloid stress tolerance in plants: Role of ascorbate, its redox couple, and associated enzymes[J]. Protoplasma, 251(6): 1265-1283. [14] Chao J Q, Zhang S X, Chen Y Y, et al.2015. Cloning, heterologous expression and characte-rization of ascorbate peroxidase (APX) gene in laticifer cells of rubber tree (Hevea brasiliensis Muell Arg.)[J]. Plant Physiology and Biochemistry, 97: 331-338. [15] Chen C J, Chen H, Zhang Y, et al.2020. TBtools: An integrative toolkit developed for interactive analyses of big biological data[J]. Molecular Plant, 13(8): 1194-1202. [16] Davletova S, Rizhsky L, Liang H J, et al.2005. Cytosolic ascorbate peroxidase 1 is a central component of the reactive oxygen gene network of Arabidopsis[J]. The Plant Cell, 17(1): 268-281. [17] Dmytro K, Barry A L, Randy D A, et al.2003. Effect of chloroplastic overproduction of ascorbate peroxidase on photosynthesis and photoprotection in cotton leaves subjected to low temperature photoinhibition[J]. Plant Science, 165(5): 1033-1041. [18] Dunajska O K, Skorupa K, Kurnik K, et al.2014. Cloning and expression analysis of a gene encoding for ascorbate peroxidase and responsive to salt stress in beet (Beta vulgaris)[J]. Plant Molecular Biology Reporter, 32(1): 162-175. [19] Faize M, Burgos L, Faize L, et al.2011. Involvement of cytosolic ascorbate peroxidase and Cu/Zn superoxide dismutase for improved tolerance against drought stress[J]. Journal of Experimental Botany, 62(8): 2599-2613. [20] Felipe K T, Larissa M B, Rogério M, et al.2004. Analysis of the molecular evolutionary history of the ascorbate peroxidase gene family: Inferences from the rice genome[J]. Journal of Molecular Evolution, 59(6): 761-770. [21] Guo K, Du X Q, Tu L L, et al.2016. Fibre elongation requires normal redox homeostasis modulated by cytosolic ascorbate peroxidase in cotton (Gossypium hirsutum)[J]. Journal of Experimental Botany, 67(11): 3289-3301. [22] Guo K, Li Z H, Tian H X, et al.2020. Cytosolic ascorbate peroxidases plays a critical role in photosynthesis by modulating reactive oxygen species level in stomatal guard cell[J]. Frontiers in Plant Science, 11: 446. [23] Hu Y, Chen J, Fang L, et al.2019. Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton[J]. Nature Genetics, 51(4): 739-748. [24] Kanzaki H, Saitoh H, Ito A, et al.2003. Cytosolic HSP90 and HSP70 are essential components of INF1-mediated hypersensitive response and non-host resistance to Pseudomonas cichorii in Nicotiana benthamiana[J]. Molecular Plant Pathology, 4(5): 383-391. [25] Kumar S, Stecher G, Li M, et al.2018. MEGA X: Molecular evolutionary genetics analysis across computing platforms[J]. Molecular Biology Evolution, 35(6): 1547-1549. [26] Kwak J M, Nguyen V, Schroeder J I.2006. The role of reactive oxygen species in hormonal responses[J]. Plant Physiology, 141(2): 323-329. [27] Li H, Qin Y, Pang Y, et al.2007. A cotton ascorbate peroxidase is involved in hydrogen peroxide homeostasis during fibre cell development[J]. New Phytologist, 175(3): 462-471. [28] Liao G L, Liu Q, Li Y Q, et al.2020. Identification and expression profiling analysis of ascorbate peroxidase gene family in Actinidia chinensis (Hongyang)[J]. Journal of Plant Research, 133(5): 715-726. [29] Livak K J, Schmittgen T D.2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method[J]. Methods, 25(4): 402-408. [30] Mittler R, Vanderauwera S, Suzuki N, et al.2011. ROS signaling: The new wave?[J]. Trends in Plant Science, 16(6): 300-309. [31] Shi W M, Muramoto Y, Ueda A, et al.2001. Cloning of peroxisomal ascorbate peroxidase gene from barley and enhanced thermotolerance by overexpressing in Arabidopsis thaliana[J]. Gene, 273(1): 23-27. [32] Tao C C, Jin X, Zhu L P, et al.2018. Genome-wide investigation and expression profiling of APX gene family in Gossypium hirsutum provide new insights inredox homeostas is maintenance during different fiber development stages[J]. Molecular Genetics and Genomics, 29(3): 685-697. [33] Urano J, Nakagawa T, Maki Y, et al.2000. Molecular cloning and characterization of a rice dehydroascorbate reductase[J]. FEBS Letters, 466(1): 107-111. [34] Xiang L C, Laranjeira-Silva M F, Maeda F Y, et al.2019. Ascorbate-dependent peroxidase (APX) from leishma nia amazonensis is a reactive oxygen species-induced essential enzyme that regulates virulence[J]. Infection and Immunity, 87(12): e00193. [35] Zhang H Y, Ni Z Y, Chen Q J, et al.2016. Proteomic responses of drought tolerant and drought-sensitive cotton varieties to drought stress[J]. Springer Berlin Heidelberg, 291(3): 1293-1303. [36] Zhang T Z, Hu Y, Jiang W K, et al.2015. Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fibre improvement[J]. Nature Biotechnology, 33(5): 531-537.