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2025年4月6日 星期日
农业生物技术学报  2024, Vol. 32 Issue (6): 1393-1403    DOI: 10.3969/j.issn.1674-7968.2024.06.015
  研究论文与报告 本期目录 | 过刊浏览 | 高级检索 |
植物病原真菌m6A识别蛋白的挖掘与功能分析
何旭1,*, 朱蒙芳1,*, 董彩奕1, 王炫1, 杨梦雨1, 巩校东1, 魏淑珍2, 谷守芹1, 刘玉卫1**, 贾慧1**
1 河北农业大学 生命科学学院/河北省农业微生物生物信息利用技术创新中心/华北作物改良与调控国家重点实验室,保定 071000;
2 河北省湿地保护与绿色发展协同创新中心,衡水 053000
Mining and Functional Analysis of m6A Recognition Proteins of Plant Pathogenic Fungi
HE Xu1,*, ZHU Meng-Fang1,*, DONG Cai-Yi1, WANG Xuan1, YANG Meng-Yu1, GONG Xiao-Dong1, WEI Shu-Zhen2, GU Shou-Qin1, LIU Yu-Wei1,**, JIA Hui1,**
1 College of Life Sciences/Hebei Bioinformatic Utilization and Technological Innovation Center for Agricultural Microbes/State Key Laboratory of North China Crop Improvement and Regulation, Hebei Agricultural University, Baoding 071000, China;
2 Hebei Collaborative Innovation Center for Wetland Protection and Green Development, Hengshui 053000, China
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摘要 N6-甲基腺嘌呤(N6-methyladenosine, m6A)修饰是真核生物中最常见的RNA修饰。包含YT521-B同源(YT521-B homology, YTH)结构域的蛋白可识别m6A修饰,从而介导RNA代谢。该类蛋白在植物病原真菌中的研究还未见报道。本研究利用生物信息学方法,对127种植物病原真菌中的m6A识别蛋白进行了系统鉴定和分析,并对该类蛋白在玉米大斑病菌(Setosphaeria turcica)发育过程中的基因表达模式进行分析。结果发现,在供试的127个菌株中共鉴定了225个m6A识别蛋白,其中担子菌门中93%真菌含有2个m6A识别蛋白;理化性质分析发现,在鉴定的225个m6A识别蛋白中,有67.56%的蛋白呈碱性,且不同门及不同生活方式真菌的m6A识别蛋白酸碱性存在显著差异。系统发育分析发现,225个m6A识别蛋白可分为5组,其中2组与人类(Homo sapiens)具有较近的进化关系,相同门和相同生活方式真菌的m6A识别蛋白倾向于聚类在同一进化分支上;保守位点分析发现,YTH结构域序列在所有鉴定的m6A识别蛋白中存在多个保守型位点。在玉米大斑病菌中鉴定了1个编码该类蛋白的基因StYTH1,表达量分析发现,其在病菌附着胞发育时期的表达量最高,可能对病菌附着胞发育具有重要的调控作用。本研究为深入揭示m6A识别蛋白的功能提供了基础资料。
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何旭
朱蒙芳
董彩奕
王炫
杨梦雨
巩校东
魏淑珍
谷守芹
刘玉卫
贾慧
关键词 植物病原真菌N6-甲基腺嘌呤(m6A)识别蛋白生物信息学分析表达模式    
Abstract:The N6-methyladenosine (m6A) is the most common RNA modification in eukaryotes. Proteins containing the YT521-B (YTH) domain recognize the m6A site and mediate RNA metabolism. However, the function of m6A recognition proteins in plant pathogenic fungi has not been reported yet. This study systematically identified and analyzed the m6A recognition proteins in 127 plant pathogenic fungi using bioinformatics method. Furthermore, the expression patterns of the genes encoding m6A recognition proteins during the development of Setosphaeria turcica were analyzed. The results showed that a total of 225 m6A recognition proteins were identified in the tested 127 fungi, and 93% of the fungi in the Basidiomycota phylum had 2 m6A recognition proteins. Physicochemical analysis showed that 67.56% of the m6A recognized proteins identified were alkaline. Notably, significant differences in the acidity and alkalinity of these proteins were observed within different phyla and fungal lifestyles. Phylogenetic analysis revealed that 225 m6A recognition proteins could be classified into 5 groups, 2 of which shared a closer evolutionary relationship with humans (Homo sapiens). Additionally, m6A recognition proteins from fungi with the same phylum and lifestyle tended to cluster together on evolutionary branches. The conserved site analysis uncovered the existence of several conserved-type sites in the sequences of the YTH domain across the 225 m6A recognized proteins. A gene that encodes the m6A recognition protein, namely StYTH1, was identified in S. turcica. Expression analysis revealed that StYTH1 had the highest expression level in the developmental stage of appressorium, suggesting that StYTH1 might be involved in regulating the development of appressorium. The present study provides basic materials for an insightful revelation of the functions of the m6A recognition proteins.
Key wordsPlant pathogenic fungi    N6-methyladenosine (m6A) recognition protein    Bioinformatics analysis    Expression pattern
收稿日期: 2023-10-18     
中图分类号: S435.131
基金资助:中央引导地方科技发展资金项目(216Z2902G; 236Z6507G); 河北省高校基础科研经费(KY2022037; KY2021042); 河北省自然科学基金(C2020204183)
通讯作者: **liuyw@hebau.edu.cn;hui_jiahui@126.com   
作者简介: *同等贡献作者
引用本文:   
何旭, 朱蒙芳, 董彩奕, 王炫, 杨梦雨, 巩校东, 魏淑珍, 谷守芹, 刘玉卫, 贾慧. 植物病原真菌m6A识别蛋白的挖掘与功能分析[J]. 农业生物技术学报, 2024, 32(6): 1393-1403.
HE Xu, ZHU Meng-Fang, DONG Cai-Yi, WANG Xuan, YANG Meng-Yu, GONG Xiao-Dong, WEI Shu-Zhen, GU Shou-Qin, LIU Yu-Wei, JIA Hui. Mining and Functional Analysis of m6A Recognition Proteins of Plant Pathogenic Fungi. 农业生物技术学报, 2024, 32(6): 1393-1403.
链接本文:  
https://journal05.magtech.org.cn/Jwk_ny/CN/10.3969/j.issn.1674-7968.2024.06.015     或     https://journal05.magtech.org.cn/Jwk_ny/CN/Y2024/V32/I6/1393
 
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