Cloning of Upstream Regulatory Region of Brucella Resistance GeneIRF3 and Screening of Gene Edited Cell Colonies of Sheep (Ovis aries)
WANG Yuan-Yuan1, YE Li-Jun1, ZHU Yan-Yan1, CHEN Yu-Xin1, SHANG Fei-Fei1, LI Ting-Ting2, WANG Hai-Tao2,*, LIU Qiu-Yue2,*
1 School of Life Science, Bengbu Medical College, Bengbu 233030, Anhui, China; 2 Innovation Academy for Seed Design, Chinese Academy of Sciences, Beijing 100101, China
Abstract:Brucellosis is one of the most serious infectious diseases in sheep (Ovis aries) and goats (Capra hircus) husbandry. In goats, mutations located at upstream regulatory region of interferon regulatory factor 3 (IRF3) gene have benefit for their resistance to brucellosis infection. IRF3 gene is highly homologous between sheep and goats, and same mutations of IRF3 can be obtained by gene editing in sheep. Aiming to obtain IRF3 edited cell colonies and supply donor cells to generate cloned Brucella resistant sheep by nuclear tranfer. The upstream open reading frame (uORF) region of sheep IRF3 gene was modified by gene editing mediated by CRISPR/Cas9 and prime editing (PE) technology. According to the reference sequence of sheep IRF3 in NCBI database, primers were designed, and the DNA sequence of IRF3 gene in Hu sheep was cloned; Small guide RNA (sgRNA) targeting IRF3-uORF and primer editing sgRNA (pegRNA) sequence were designed based on cloned sequences. All sgRNAs were constructed into the expression vector. Fetal fibroblast cell lines derived from Hu sheep were transfected by CRISPR/Cas9 or PE expression vectors. After monoclonal cell screening, two positive monoclonal cell lines with 10 bp deletion in IRF3-uORF region were successfully obtained by CRISPR/Cas9 but no positive colonies were obtained by PE. This study provide new ideas for combining somatic cloning to obtain new Brucella-resistant sheep germplasm at animal level.
王媛媛, 叶丽君, 朱妍妍, 陈玉欣, 尚菲菲, 李亭亭, 王海涛, 刘秋月. 绵羊布鲁氏杆菌抗性基因 IRF3 上游调控区克隆及其基因编辑单克隆细胞株的筛选[J]. 农业生物技术学报, 2023, 31(8): 1555-1566.
WANG Yuan-Yuan, YE Li-Jun, ZHU Yan-Yan, CHEN Yu-Xin, SHANG Fei-Fei, LI Ting-Ting, WANG Hai-Tao, LIU Qiu-Yue. Cloning of Upstream Regulatory Region of Brucella Resistance GeneIRF3 and Screening of Gene Edited Cell Colonies of Sheep (Ovis aries). 农业生物技术学报, 2023, 31(8): 1555-1566.
[1] 马得才.2019. 羊布鲁氏杆菌病防疫[J]. 中兽医学杂志, 2:62. (Ma D C.2019. Vaccination of sheep brucellosis[J]. Chinese Journal of Traditional Veterinary Science, 2: 62.) [2] 王海涛, 李亭亭, 黄勋, 等. 2021. 遗传修饰技术在绵羊分子设计育种中的应用[J]. 遗传, 43(06): 580-600. (Wang H T, Li T T, Huang X, et al. 2021. Application of genet-ic modification technologies in molecular design breed-ing of sheep[J]. Hereditas, 43(06): 580-600. [3] 王欢, 邹惠影, 朱化彬, 等. 2021. Crispr/cas9 基因编辑技术在家畜育种新材料创制中的研究进展[J]. 畜牧兽医学报, 52(04): 851-861. (Wang H, Zhou H Y, Zhu H B, et al. 2021. Advances in evaluation of livestock breeding new materials by using the CRISPR/Cas9 gene editing techonology[J]. Acta Veterinaria et Zootechnica Sinica,52(04): 851-861.) [4] 邹菊红, 邹剑伟, 申玉建, 等. 2021. 基因编辑技术在家畜育种中的研究进展[J]. 中国畜牧杂志, 57(11): 45-50. (Zhou J H, Jian J W, Shen Y J, et al. 2021. Advances in autophagy in male reproductive physiology[J]. Chinese Journal of Animal Science, 57(11): 45-50.) [5] Anzalone A V, Randolph P B, Davis J R, et al. 2019. Search- and-replace genome editing without double-strand breaks or donor DNA[J]. Nature, 576(7785): 149-157. [6] Chen P J, Hussmann J A, Yan J, et al. 2021. Enhanced prime editing systems by manipulating cellular determinants of editing outcomes[J]. Cell, 184(22): 5635-5652.e29. [7] de Almeida L A, Carvalho N B, Oliveira F S, et al. 2011. [8] Myd88 and sting signaling pathways are required for irf3-mediated ifn- β induction in response to Brucella abortus infection[J]. PLOS ONE, 6(8): e23135. [9] Grandvaux N, Servant M J, tenOever B, et al. 2002. Transcriptional profiling of interferon regulatory factor 3 target genes: Direct involvement in the regulation of interfer-on-stimulated genes[J]. Journal of Virology, 76(11):5532-5539. [10] Gupta S, You P, SenGupta T, et al. 2021. Crosstalk between different DNA repair pathways contributes to neurode-generative diseases[J]. Biology (Basel), 10(2): 163. [11] Honda K, Takaoka A, Taniguchi T.2006. Type i interferon [corrected] gene induction by the interferon regulatory factor family of transcription factors[J]. Immunity, 25(3): 349-360. [12] Kalds P, Zhou S, Cai B, et al. 2019. Sheep and goat genome engineering: From random transgenesis to the crispr era[J]. Frontiers in Genetics, 10: 750. [13] Lalsiamthara J, Lee J. H.2017. Development and trial of vac-cines against Brucella[J]. Journal of Veterinary Science,18(S1): 281-290. [14] Li R, Zeng W, Ma M, et al. 2020. Precise editing of myostatin signal peptide by crispr/cas9 increases the muscle mass of liang guang small spotted pigs[J]. Transgenic Re-search, 29(1): 149-163. [15] Li X, Zhou L, Gao B Q, et al. 2022. Highly efficient prime ed-iting by introducing same-sense mutations in pegrna or stabilizing its structure[J]. Nature Communication, 29;13(1): 1669. [16] Nelson J W, Randolph P B, Shen S P, et al. 2022. Engineered pegrnas improve prime editing efficiency[J]. Nature Bio-technology, 40(3): 402-410. [17] Rossi U A, Hasenauer F C, Caffaro M E, et al. 2019. Association of an irf3 putative functional uorf variant with resis-tance to Brucella infection: A candidate gene based anal-ysis of indel polymorphisms in goats[J]. Cytokine, 115:109-115. [18] Seleem M N, Boyle S M, Sriranganathan N, et al. 2010. Bru-cellosis: A re-emerging zoonosis[J]. Veterinary Microbi-ology, 140(3-4): 392-398. [19] Tamura T, Yanai H, Savitsky D, et al. 2008. The irf family transcription factors in immunity and oncogenesis[J]. Annual Review of Immunology, 26(1): 535-584. [20] Tao R, Wang Y, Hu Y, et al. 2022. Wt-pe: Prime editing with nuclease wild-type cas9 enables versatile large-scale ge-nome editing[J]. Signal Transductuction andTargeted Therapy, 7(1): 108. [21] Watson R O, Bell S L, MacDuff D A, et al. 2015. The cytosol-ic sensor cgas detects mycobacterium tuberculosis DNA to induce type i interferons and activate autophagy[J]. Cell Host & Microbe, 17(6): 811-819. [22] Xu X, Li M, Deng Z, et al. 2020. Grass carp (Ctenopharyngo-don idellus) nima-related kinase 6 blocks dsrna-induced ifn i response by targeting irf3[J]. Frontiers in Immunol-ogy, 11: 597775. [23] Xu Z Q, Ding Y, Huang X Y, et al. 2021. Circelk4 contributes to lupus nephritis by acting as a mir-27b-3p sponge to regulate sting/irf3/ifn-i signaling[J]. Inflammation, 44(5): 2106-2119. [24] Zan J, Xu R, Tang X, et al. 2020. Rna helicase ddx5 suppress-es ifn-i antiviral innate immune response by interacting with pp2a-cβ to deactivate irf3[J]. Experimental Cell Re-search, 15; 396(2): 112332. [25] Zhang G, Liu Y, Huang S, et al. 2022. Enhancement of prime editing via xrrna motif-joined pegrna[J]. Nature Com-munication, 6; 13(1): 1856. [26] Zong Y, Liu Y, Xue C, et al. 2022. An engineered prime editor with enhanced editing efficiency in plants[J]. Nature Biotechnology, 40(9): 1394-1402.