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2025年8月21日 星期四
  2018, Vol. 26 Issue (12): 2109-2120    
  研究论文与报告 本期目录 | 过刊浏览 | 高级检索 |
悬铃木方翅网蝽触角转录组及嗅觉相关基因分析
杨海博,胡镇杰,李定旭,朱品红,董钧锋
河南科技大学
Analysis of the Antennal Transcriptome and Olfactory-related Genes of the Sycamore Lace Bug (Corythucha ciliata)
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摘要 悬铃木方翅网蝽(Corythucha ciliata)是专一性危害悬铃木(Platanus acerifolia)的重要害虫。本研究的目的是建立悬铃木方翅网蝽成虫触角转录组数据库,获得与嗅觉相关的基因信息。以悬铃木方翅网蝽雌雄成虫触角为材料,利用高通量测序平台Illumina HiSeqTM 4000进行转录组测序,并进行生物信息学分析。得到平均长度为1 036 bp,N50为1 809 bp,共65 943条单基因簇(Unigenes)。通过同源性比对,成功注释16 600条Unigenes,其中,在NCBI蛋白数据库(NCBI Non-redundant Protein Sequences, Nr)注释的Unigenes与内华达古白蚁(Zootermopsis nevadensis)Unigenes的相似基因序列最多,为14.40%。与基因本体数据库(gene ontology, GO)比对发现,6 435条Unigenes,根据其功能大致可分为细胞组分、分子功能和生物过程3大类52亚类,与代谢进程、细胞进程、催化活性和结合相关的Unigenes较多。基因表达分析发现,一共得到1 116个差异表达基因,其中有1 096个基因上调,有20个基因下调。京都基因与基因组百科全书(Kyoto encyclopedia of genes and genomes, KEGG)富集分析表明,6 309条Unigenes归属于255个通路,有346个差异表达基因,参与碳代谢的基因最多(20个)。进一步筛选获得194个嗅觉相关基因,包括77个气味受体基因(odorant receptor, OR),64个气味降解酶基因(odorant degrading enzyme, ODE),26个气味结合蛋白基因(odorant binding protein, OBP),11个离子型受体基因(ionotropic receptor, IR),14个化学感受蛋白基因(chemosensory protein, CSP)和2个感觉神经元膜蛋白基因(sensory neuron membrane protein, SNMP),并用FPKM (fragments per kilobase per million reads)值对基因表达量进行评估。本研究初步阐明悬铃木方翅网蝽成虫触角转录组的整体表达模式,为进一步研究悬铃木方翅网蝽嗅觉调控机理提供了资料基础。
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杨海博
胡镇杰
李定旭
朱品红
董钧锋
关键词 悬铃木方翅网蝽触角转录组高通量测序基因注释嗅觉基因    
Abstract:Corythucha ciliata is a major and specific pest of Platanus acerifolia. The objective of this study is to establish the antennal transcriptome database of the sycamore lace bug (Corythucha ciliata), and to obtain the olfactory-related genes in C. ciliata. The antennal transcriptome of male and female adults of C. ciliata was sequenced using Illumina HiSeqTM 4000 platform and bioinformatics analysis. A total of 65 943 Unigenes were obtained, with a mean length of 1 036 bp and an N50 of 1 809 bp. Through a similarity search, 16 600 Unigenes were annotated, most Unigenes (23.12%) were annotated to a database of orthologous groups of gene (eggNOG) database. All Unigenes against the NCBI Non-redundant Protein Sequences (Nr) database had the highest similarity (14.40%) with those of Zootermopsis nevadensis. Moreover, according to Gene Ontology (GO) database, 6 435 Unigenes were broadly divided into 52 branches of 3 categories: 16 271 Unigenes to be related to biological processes categories, 10 285 Unigenes related to cellular components, and 7 989 Unigenes related to molecular functions, and more Unigenes were annotated to be related to metabolic process, cellular process, catalytic activity and binding activity. Gene expression analysis showed that a total of 1 116 genes expressed differentially, involving in 1 096 genes up-regulated genes and 20 down-regulated genes. According to clusters of orthologous groups of proteins (KOG) database, 10 335 Unigenes were divided 25 categories, 2 515 and 1 233 Unigenes were related to general function prediction only and signal transduction mechanisms, respectively. By searching Kyoto Encyclopedia of Genes and Genomes (KEGG) database, 6 309 Unigenes were assigned to 255 metabolic pathways. Including 346 differentially expression genes, among these, the most genes (20) were involved in metabolic pathways of carbon. By further screening and identification, 194 olfactory-related genes of C. ciliata were obtained, including 77 odorant receptors (OR) genes, 64 odorant degrading enzymes (ODE) genes, 26 odorant binding proteins (OBP) genes, 11 ionotropic receptors (IR) genes, 14 chemosensory proteins (CSP) genes and 2 sensory neuron membrane proteins (SNMP) genes. A total of 65 943 Unigenes, 5 404 Unigenes with higher expression abundance (FPKM>10) and 12 726 Unigenes with an FPKM (fragments per kilobase per million reads) value of 0. There were 2 OBP genes among the top 50 genes with higher expression abundance, and the highest expression level of OBP gene with an FPKM value of 953. This study preliminarily clarified the whole expression pattern of the antennal transcriptome of male and female adults of C. ciliata, which will provide a molecular foundation for further studying the mechanism of olfactory regulation of C. ciliata.
Key wordsCorythucha ciliata    Antennal transcriptome    High throughput sequencing    Gene annotation    Olfactory gene
收稿日期: 2018-05-29      出版日期: 2018-11-20
ZTFLH:  S718.7  
基金资助:河南省科技攻关项目;河南科技大学博士启动基金
通讯作者: 董钧锋     E-mail: junfengdong@haust.edu.cn
引用本文:   
杨海博 胡镇杰 李定旭 朱品红 董钧锋. 悬铃木方翅网蝽触角转录组及嗅觉相关基因分析[J]. , 2018, 26(12): 2109-2120.
链接本文:  
http://journal05.magtech.org.cn/Jwk_ny/CN/     或     http://journal05.magtech.org.cn/Jwk_ny/CN/Y2018/V26/I12/2109
 
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