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2025年8月13日 星期三
  2017, Vol. 25 Issue (1): 58-66    
  研究论文与报告 本期目录 | 过刊浏览 | 高级检索 |
乌头微卫星引物开发及遗传多样性研究
杨恒1,周天华2
1. 陕西理工学院
2. 陕西理工大学 生物科学与工程学院
The Development of Novel Microsatellite Markers and Genetic Diversity Study for Aconitum carmichaeli
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摘要 乌头(Aconitum carmichaeli)为毛茛科(Ranunculace)乌头属(Aconitum)的多年生草本植物,是我国一种传统常用中药材。为了开发乌头微卫星引物,分析乌头的遗传多样性与遗传分化。本研究利用Illumina高通量测序技术建立乌头基因文库,筛选微卫星片段,建立微卫星文库。设计微卫星片段的引物,应用开发的微卫星引物对4个野生乌头种群80个个体进行扩增和聚丙烯凝胶电泳,以检测微卫星引物的多态性和居群的遗传多样性,应用乌头的4个近缘种进行微卫星引物通用性检测。研究结果显示,得到12 095条片段的微卫星文库,55条微卫星片段被设计成引物,经检测筛选得到14对条带清晰、多态性丰富的引物(等位基因数目(number of alleles, A)=4.85, 期望杂合度(expected heterozygosity, He)=0.583, 观测杂合度(observed heterozygosity, HO)=0.613, PIC=0.528)。乌头引物的通用性检测结果表明,大部分引物能在乌头近缘种中成功扩增。乌头在物种水平上具有较高的遗传多样性(A=3.25, He=0.493, Nei's遗传多样性指数(Nei's gene diversity, h)=0.505, Shannon's信息指数(Shannon's information index, I)=0.851);居群间具有一定的遗传分化杂合性基因多样性(heterozygosity gene diversity, FST)=0.149,居群间基因流(gene flow between populations, NM)=1.432有限。研究结果表明,本研究所开发的乌头微卫星引物具有较高的多态性和很好的通用性,乌头在物种水平上有较高的遗传多样性。本研究为乌头种质资源和混伪品的鉴定,乌头优质种质资源的保护、开发及后续研究提供了理论依据。
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杨恒
周天华
关键词 乌头微卫星分子标记引物开发居群遗传多样性    
Abstract:Aconitum carmichaeli is a perennial herb of Aconitum in family Ranunculace, and it can be radix aconiti as medicine. Reports about Aconitum drug poisoning incidents have been very common, which are mainly caused by failure to identify species of Aconitum effectively. Through the research on development of Aconitum microsatellite primer and genetic diversity, the research realized fast and accurate identification of genetic resources and fake A. carmichaeli, which provided scientific guarantee for protection, development and successive research on superior genetic resources of A. carmichaeli. By extracting DNA of A. carmichaeli, establishing genomic library of A. carmichaeli, and sequencing A. carmichaeli with Illumina high-throughput sequencing technology, the research acquired plenty of 100 bp short-sequence microsatellite fragments. After screening the microsatellite fragments, microsatellite library of A. carmichaeli was established. According to the results, through second-generation high-throughput sequencing technology of Illumina, 38 942 660 strips of 125 bp pairing sequence were acquired. Through quality trim, 200 386 strips of splicing sequence were obtained after assembly. After filtration and screening, 12 095 strips of sequence fragments being larger than 299 bp were acquired finally. The fragments with repeat segment being larger than 100 bp were selected from microsatellite library of A. carmichaeli for primer design of microsatellite, and 55 pairs of microsatellite primers were obtained. By the use of these 55 pairs of microsatellite primers, amplification and polypropylene gel electrophoresis were carried out for 80 individuals from 4 wild Aconitum populations to detect the polymorphism of microsatellite primers and genetic diversity of population. After detection, 14 pairs of Aconitum microsatellite primers with clear stripe and rich polymorphism were acquired. For the 14 pairs of Aconitum microsatellite primers, average number of allele (A) was 4.85, average observation heterozygosity (Ho) was 0.613, average expected heterozygosity (He) was 0.583 and PIC was 0.528. Four sibling species of A. carmichaeli were used for universality detection of microsatellite primers. It was found that the stripe of 11 pairs of microsatellite primers were clear, and they occupied 78.57% of total microsatellite primers. According to the results of universality detection of Aconitum microsatellite primers, most of the microsatellite primers were proved amplifiable in sibling species of A. carmichaeli. Through analysis of genetic diversity of 4 A. carmichaeli populations, it was found that A. carmichaeli showed high genetic diversity at species level. Besides, for the Aconitum populations, A was 3.25, HO was 0.612, He was 0.493, Shannon's information index (I) was 0.851 and Nei's genetic diversity index (h) was 0.505. Genetic differentiation between populations showed that certain genetic differentiation (FST=0.149) existed in 4 populations of A. carmichaeli and gene flow between populations (NM)=1.432 was limited. According to research results, 14 pairs of microsatellite primers developed by the research showed high polymorphism and good universality, which could be used for identification of genetic resources, analysis of genetic diversity and construction of DNA fingerprint of A. carmichaeli. From the perspective of species level, A. carmichaeli had rich genetic diversity, which verifies abundant heritable variation ability of A. carmichaeli from DNA level and explained strong evolution potentiality of A. carmichaeli. The study will offer scientific guarantee for identification of genetic resources and fake A. carmichaeli, protection, development and successive research on superior genetic resources of A. carmichaeli.
Key wordsAconitum carmichaeli    Microsatellite markers    Primer development    Population    Genetic diversity
收稿日期: 2016-06-20      出版日期: 2016-12-24
基金资助:陕西省自然科学基础研究计划
通讯作者: 周天华     E-mail: zhou3687@126.com
引用本文:   
杨恒 周天华. 乌头微卫星引物开发及遗传多样性研究[J]. , 2017, 25(1): 58-66.
链接本文:  
http://journal05.magtech.org.cn/Jwk_ny/CN/     或     http://journal05.magtech.org.cn/Jwk_ny/CN/Y2017/V25/I1/58
 
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