Identification and Expression Analyses of PRX Genes Family in Maize (Zea mays)
HAO Li-Dong1,2,3, XU Lei4,*, YAN Zhi-Bin5, LI Shi-Feng5, SHI Yun-Qiang6
1 Postdoctoral Research Station of Gansu Dunhuang Seed Industry Group Co., Ltd, Jiuquan 735000, China; 2 Postdoctoral Mobile Station of Biology, Lanzhou University, Lanzhou 730030, China; 3 Qionghai Tropical Crops Service Center, Qionghai 571400, China; 4 Heilongjiang Provincial Academy of Agricultural Sciences, Daqing Branch, Daqing 163319, China; 5 Research Institute of Gansu Dunhuang Seed Industry Group Co. Jiuquan 735000, China; 6 Heilongjiang Provincial Academy of Agricultural Sciences, Suihua Branch, Suihua 152000, China
Abstract:Class Ⅲ peroxidases (PRXs) are a family of genes unique to higher plants that are widely involved in catalyzing hydrogen peroxide, phenolic compounds and reactive oxygen species. To date, the study of the PRX gene family at the genome-wide level in Zea mays has not been reported. This study utilized bioinformatic methods to conduct a comprehensive analysis of the PRX gene family at the whole-genome level in maize, and examining their expression patterns in different tissues and under various stress conditions. The results indicated that a total of 90 ZmPRX genes were identified, unevenly distributed across the 10 chromosomes of maize. Specifically, 12 of these genes were found to be involved in 6 segmental duplication events, while 15 genes participated in 6 tandem duplication events. Phylogenetic analysis classified them into 8 branches, with genes in the same branch having similar gene structures and conserved motifs. Cis-element analysis revealed that there were 5 categories of elements distributed in the promoter region of ZmPRX genes, including hormonal responsiveness, stress responsiveness, growth and development, light responsiveness, and universal elements. The expression pattern analysis revealed that the expression of ZmPRX genes exhibited tissue-specific characteristics and were significantly induced under different abiotic stress conditions. Furthermore, under drought stress conditions, the expression level of the ZmPRX gene in the drought-tolerant inbred line 54358 significantly increases, suggesting that this variety possesses strong capabilities in resisting drought stress. This study provides a theoretical basis for further investigating the functional characteristics of PRX genes in maize.
[1] Bindschedler L V, Dewdney J, Blee K A, et al.2006. Peroxidase-dependent apoplastic oxidative burst in Arabidopsis required for pathogen resistance[J]. Plant Journal, 47(6): 851-863. [2] Brutnell T P.2002. Transposon tagging in maize[J]. Functional & Integrative Genomics, 2(1-2): 4-12. [3] Daudi A., Cheng Z., O'Brien J A., et al.2012. The apoplastic oxidative burst peroxidase in Arabidopsis is a major component of pattern-triggered immunity[J]. Plant Cell, 24: 275-287. [4] Fernández-Pérez F, Pomar F, Pedreño M A, et al.2015. The suppression of AtPrx52 affects fibers but not xylem lignification in Arabidopsis by altering the proportion of syringyl units[J]. Physiology Plant, 154(3): 395-406. [5] Gho Y S, Park S A, Kim S R, et al.2017. Comparative expression analysis of rice and Arabidopsis peroxiredoxin genes suggests conserved or diversified roles between the two species and leads to the identification of tandemly duplicated rice peroxiredoxin genes differentially expressed in seeds[J]. Rice (N Y), 10(1): 30. [6] Herrero J, Fernández-Pérez F, Yebra T, et al.2013. Bioinformatic and functional characterization of the basic peroxidase 72 from Arabidopsis thaliana involved in lignin biosynthesis[J]. Planta, 237(6): 1599-612. [7] Hiraga S, Sasaki K, Ito H, et al.2001. A large family of class Ⅲ plant peroxidases[J]. Plant and Cell Physiology, 42(5): 462-468. [8] Jemmat A M, Ranocha P, Le Ru A, et al.2020. Coordination of five class Ⅲ peroxidase-encoding genes for early germination events of Arabidopsis thaliana[J]. Plant Science, 298: 110565. [9] Jeon H S, Jang E, Kim J, et al.2023. Pathogen-induced autophagy regulates monolignol transport and lignin formation in plant immunity[J]. Autophagy, 19(2): 597-615. [10] Kim B H, Kim S Y, Nam K H.2012. Genes encoding plant-specific class Ⅲ peroxidases are responsible for increased cold tolerance of the brassinosteroid-insensitive 1 mutant[J]. Molecular Cells, 34(6): 539-548. [11] Kumar S, Jaggi M, Sinha A K.2012. Ectopic overexpression of vacuolar and apoplastic Catharanthus roseus peroxidases confers differential tolerance to salt and dehydration stress in transgenic tobacco[J]. Protoplasma, 249(2): 423-432. [12] Linkies A, Schuster-Sherpa U, Tintelnot S, et al.2010. Peroxidases identified in a subtractive cDNA library approach show tissue-specific transcript abundance and enzyme activity during seed germination of Lepidium sativum[J]. Journal of Experimental Botany, 61(2): 491-502. [13] Llorente F, López-Cobollo R M, Catalá R,et al.2002. A novel cold-inducible gene from Arabidopsis, RCI3, encodes a peroxidase that constitutes a component for stress tolerance[J]. Plant Journal, 32(1): 13-24. [14] Luo W, Tan J, Li T, et al.2023. Overexpression of maize GOLDEN2 in rice and maize calli improves regeneration by activating chloroplast development[J]. Science China Life Science, 66(2): 340-349. [15] Marzol E, Borassi C, Carignani Sardoy M, et al.2022, Class Ⅲ peroxidases PRX01, PRX44, and PRX73 control root hair growth in Arabidopsis thaliana[J]. International Journal of Molecular Science, 23(10): 5375. [16] Qin Q, Zhao Y, Zhang J, et al.2022. A maize heat shock factor ZmHsf11 negatively regulates heat stress tolerance in transgenic plants[J]. BMC Plant Biology, 22(1): 406. [17] Shigeoka S, Ishikawa T, Tamoi M, et al.2002. Regulation and function of ascorbate peroxidase isoenzymes[J]. Journal of Experimental Botany, 53(372): 1305-1319. [18] Shigeto J, Tsutsumi Y.2016. Diverse functions and reactions of class Ⅲ peroxidases[J]. New Phytologist, 209(4): 1395-1402. [19] Tognolli M, Penel C, Greppin H, et al.2002. Analysis and expression of the class Ⅲ peroxidase large gene family in Arabidopsis thaliana[J]. Gene, 288(1-2): 129-138. [20] Vatulescu A D, Fortunato A S, Sá M C, et al.2004. Cloning and characterisation of a basic IAA oxidase associated with root induction in Vitis vinifera[J]. Plant Physiology and Biochemistry, 42(7-8): 609-615. [21] Yang X, Yuan J, Luo W, et al.2020. Genome-wide identification and expression analysis of the class Ⅲ peroxidase gene family in potato (Solanum tuberosum L.)[J]. Frontiners in Genetics, 3;11: 593577. [22] Zhang H, Wang Z, Li X, et al.2022. The IbBBX24-IbTOE3-IbPRX17 module enhances abiotic stress tolerance by scavenging reactive oxygen species in sweet potato[J]. New Phytologist, 233(3): 1133-1152. [23] Zhu X, Jiang L, Cai Y, et al.2021. Functional analysis of four Class Ⅲ peroxidases from Chinese pear fruit: A critical role in lignin polymerization[J]. Physiology and Molecular Biology of Plants, 27(3): 515-522.