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本期目录
2022 Vol. 30, No. 6 Published: 01 June 2022
Articles and Letters
Construction of
Gallus gallus RIPK2
Gene Lentiviral Interference Vector and Screening of HD11 with Stably Low Expressing
RIPK2
SUN Hong-Yan, CHEN Ting-Hong, WU Yu-Xiang, SUN Chang-Hua, LI Huan
2022, 30(6): 1031-1042 |
doi:
10.3969/j.issn.1674-7968.2022.06.001 | Full text
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Abstract
In a previous study, by high-throughput sequencing, receptor interacting serine/threonine kinase 2 (RIPK2) was demonstrated to be highly up-regulated in the immune and inflammatory response of chickens (
Gallus gallus
). To investigate the function of
RIPK2
-mediated NOD/RIPK2 signaling pathway in chicken macrophage cell line (HD11) for immunity and inflammation, a chicken HD11 stably interfering with
RIPK2
gene was established by using
Lentivirus
-mediated RNA interference approach. According to the sequence of chicken
RIPK2
gene, three RNA interference target sequences and one negative control sequence were designed for
RIPK2
gene, recombined with the pLVshRNA-EGFP(2A) Puro interference vector, and then transiently transfected into HD11. Interference efficiency of each target on
RIPK2
was tested by qRT-PCR and the recombinant vector with high interference efficiency was packaged with
Lentivirus
to transfect HD11. qRT-PCR and Western blot were used to detect the expression changes of
RIPK2
and the downstream key genes
IKKα
(component of inhibitor of nuclear factor kappa B kinase complex),
IKKβ
(inhibitor of nuclear factor kappa B kinase subunit beta),
NFκB
(nuclear factor kappa B subunit 1) and
IL1β
(interleukin 1 beta) of NOD/RIPK2 signaling pathways in different experimental groups. Meanwhile the
RIPK2
overexpression vector (pcDNA3.1-
RIPK2
) was constructed for the rescue experiment of
RIPK2
gene. Three recombinant plasmid of
RIPK2
-shRNA1 (small hairpin RNA 1),
RIPK2
-shRNA2 and
RIPK2
-shRNA3 were successfully constructed. The recombinant plasmids of
RIPK2
-shRNA1 and
RIPK2
-shRNA3 had the most obviously inhibitory effect of (77.4±0.61)% and (90.21±0.68)%, respectively on the
RIPK2
gene. The
RIPK2
-shRNA3 recombinant plasmid was packaged into retrovirus with a virus titer of 2×10
8
TU/mL. After the
RIPK2
-shRNA3
Lentivirus
was transfected into HD11, the results of qRT-PCR and Western blot showed that
RIPK2
mRNA and protein expression level in the interference group were significantly low compared to control group (
P
<0.05). The expression of downstream key genes
IKKα
,
IKKβ
,
NFκB
and
IL1β
of the NOD/RIPK2 signaling pathway were significantly down-regulated (
P
<0.05). The interference group was transfected with
RIPK2
overexpression vector (pcDNA3.1-
RIPK2
), and the expression level of
RIPK2
was recovered. In this study, a lentiviral vector expressing shRNA targeting chicken
RIPK2
was successfully constructed, which can effectively silence the expression of
RIPK2
gene in HD11. Moreover, HD11 stably expressing
RIPK2
-shRNA3 can interfere with NOD/RIPK2 signal transduction. The results will provide a theoretical basis for further research on the function of chicken
RIPK2
gene and its mediated NOD/RIPK2 signaling pathway.
Genome-wide Identification of LEA-2 Gene Family in
Zea mays
and
ZmLEA53
Functional Preliminary Verification
WANG Guo-Rui, LU Xiao-Min, ZHANG Peng-Yu, CAO Li-Ru, GUO Jin-Sheng, FU Jia-Xu, WANG Tong-Chao, WEI Li
2022, 30(6): 1043-1057 |
doi:
10.3969/j.issn.1674-7968.2022.06.002 | Full text
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Abstract
Late embriogenesis abundant protein-2 (LEA-2) gene family play important role in plant growth,development and abiotic stresses. In order to investigate the response of ZmLEA-2 family proteins to drought stress, the LEA-2 protein sequence in maize (
Zea mays
),
Sorghum bicolor
, and
Arabidopsis thaliana
were aligned, also analyzed the gene structure,conserved motifs and position on the chromosome. The collinearity of ZmLEA-2 gene family in maize species were analyzed. Collinearity analysis between the maize, sorghum and
Arabidopsis thaliana
were also performed. The expression pattern of ZmLEA-2 family genes were analyzed based on the transcriptome data, and the function of
ZmLEA53
was preliminary verificated.The results showed that 81 ZmLEA-2 genes were unevenly distributed on 10 chromosomes; the phylogenetic tree analysis showed that 81 ZmLEA-2 genes were divided into 7 groups, and genes in the same group had similar gene structure and conserved motifs. 81 ZmLEA-2 genes exhibited different expression patterns. Under drought stress, the expression of
ZmLEA53
,
ZmLEA7
and
ZmLEA64
was up-regulated and decreased after rewatering. It was speculated that these genes were involved in the regulation of drought tolerance. qPCR results showed that the expression of
ZmLEA53
was positively regulated by drought, salt and high temperature. Overexpression of
ZmLEA53
could improve the survival rate of yeast (
Saccharomyces
) cells under drought (PEG), salt and high temperature stress, respectively. The results provide a basis for further functional identification of ZmLEA-2 gene family under drought stress.
Cloning and Expression Analysis of Flowering-related Gene
VrFT2a
in Mung Bean (
Vigna radiata
)
YU Jing-Jing, LI Meng-Xin, CAI De-Bao, LIU Jia-Fei, ZHANG Jun, ZHANG Wan, CAO Ling-Ling, CHEN Ji-Bao, YANG Shu-Qing
2022, 30(6): 1058-1068 |
doi:
10.3969/j.issn.1674-7968.2022.06.003 | Full text
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Abstract
Mung bean (
Vigna radiata
) is the main coarse grain crop in China, and the flowering time plays an important impact on the production, quality and fertile period of mung bean. FLOWERING LOCUS T (FT) genes play an important role in the flowering pathway of plant, which are also the key genes in the flowering regulatory network. In order to clarify the regulatory role of FT family homologous genes in the photoperiod-related flowering of mung bean, the cDNA sequence of
VrFT2a
(GenBank NO. XM_014651110) was cloned from the photoperiod-sensitive mung bean variety 'Xinzheng'. The coding region, encoded proteins characteristics, and its expression patterns of
VrFT2a
in different tissues and photoperiod conditions were analyzed by bioinformatics. Nine light responsive
cis
-acting elements were found in the promoter region of
VrFT2a
, the full-length of cDNA was 531 bp, which encoding 176 amino acids wherein the 27th to 162th amino acids were highly conserved PEBP (phosphatidylethanolamine-binding protein) family domain. The encoding protein of VrFT2a was a non-secretory hydrophilic protein with none signaling peptide. Subcellular localization analysis indicated that VrFT2a localized in plasma membrane and nucleus. Phylogenetic analysis showed that the amino acids of VrFT2a had a higher homology with other FTs. VrFT2a, GmFT2a, and AtFT had similar three-dimensional protein structures, and the conserved flowering-related amino acids of FT (Tyr85/Gln140). qRT-PCR analyses revealed that
VrFT2a
was expressed in different tissues, with its highest expression in trifoliolates of mung bean. The expression level of
VrFT2a
exhibited an obvious diurnal rhythm under long-day and short-day conditions, and it also was specifically induced by the short-day conditions significantly. The results implicated that
VrFT2a
might involve in the photoperiod regulatory pathway of mung bean. This study will provide a theoretical reference for further deconstruction of the molecular mechanisms of FT family genes in photoperiodic regulation pathways of mung bean.
Cloning and Bioinformatics Analysis of
GbUGT73C1
Gene Responding to
Fusarium
wilt Resistance in
Gossypium barbadense
DENG Xiao-Juan, LU Xiao-Shuang, ZHANG Meng-Jie, HAN Wan-Li, CHEN Quan-Jia, QU Yan-Ying
2022, 30(6): 1069-1077 |
doi:
10.3969/j.issn.1674-7968.2022.06.004 | Full text
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Abstract
Fusarium
wilt seriously endangers the growth and development of sea islands cotton (
Gossypium barbadense
). Previous study based on the transcriptome data of sea island cotton inoculated with
Fusarium oxysporum
, the resistance-related gene uridine diphosphate glycosyltransferase 73C1 (
GbUGT73C1
) was screened and identified. In this study, the full length of the
GbUGT73C1
gene CDS was found through the sea island cotton genome, and the gene was cloned from '06-146' with high resistance to
Fusarium
wilt. The cloned nucleic acid and amino acid sequences were performed with bioinformatics analysis, and the gene expression was analyzed after inoculation with disease resistance and susceptible material. The results showed that the full length of CDS of
GbUGT73C1
was 1 486 bp, a total of 476 amino acids were encoded. The coding protein included hydrophobic, fat-soluble and unstable protein, without transmembrane structure and signal peptide. With glycocyltransferase-B (GT-B) structure, it belonged to the glycosyltransferase GT-B superfamily. GbUGT73C1 protein was predicted to be localized in the cytoplasmic. The prediction of molecular phylogenetic relationship was closest to that of
G. barbadense
and
G. raimondii
.
GbUGT73C1
was expressed rapidly in disease-resistant material, and the expression level was extremely significantly higher than that in disease-susceptible material (
P
<0.01), indicated that resistant '06-146' resisted
Fusarium
wilt infection by expressing
GbUGT73C1
gene more rapidly and in a higher amount .This study lays a foundation for further investigation on the mechanism of
GbUGT73C1
response to sea island cotton's resistance to
Fusarium
wilt, and provides important gene resources for cotton disease-resistance molecular breeding.
Effects of Different Storage Conditions on the Content of Chlorophyll and Expression Analysis of Related Genes in Celery (
Apium graveolens
)
JIA Min, ZHU Sheng-Qi, WANG Ya-Hui, TAN Shan-Shan, LIU Jie-Xia, XIONG Ai-Sheng
2022, 30(6): 1078-1086 |
doi:
10.3969/j.issn.1674-7968.2022.06.005 | Full text
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Abstract
Celery (
Apium graveolens
) is an important leafy vegetable with high nutritional values and numerous medicinal functions. Chlorophyll content is one of the important indexes to evaluate the quality of celery during storage after harvest. The influence on the content of chlorophyll in celery under different postharvest environmental conditions is still unclear. In this study, 'Sijixiaoxiangqin' and 'Liuhehuangxinqin' were stored at 3 different storage conditions of room temperature (25 ℃), low temperature (4 ℃) and darkness at room temperature (25 ℃). The chlorophyll contents and the expression levels of metabolism-related genes (
AgMPE
,
AgPPH
,
AgPAO
,
AgCAO
,
AgNOL
and
AgHCAR
) were detected at 0, 6, 24, 30, 48 and 54 h after treatment. The results showed that the average contents of chlorophyll
a
and chlorophyll
b
were the highest under low temperature treatment, and total accumulation of chlorophyll was the highest at low temperature storage except for 24 and 30 h, and the peak of total chlorophyll content appeared at low temperature. The total chlorophyll content under darkness at room temperature condition was higher than that under room temperature condition. The transcription level of
AgCAO
gene changed significantly with the increase of storage time, which was consistent with the accumulation pattern of chlorophyll
b
. The results indicated that low temperature condition inhibited the degradation of chlorophyll content and could better maintain the chlorophyll content of celery. Low temperature could maintain the nutritional and sensory quality of celery. This study provides a reference for exploring the regulation pattern of chlorophyll accumulation and related genes in celery after harvest.
Cloning, Expression and Interaction with AP2/ERF Transcription Factor Analysis of
CAMTA1
Gene from
Corchorus capsularis
ZHANG Gao-Yang, DENG Jie-Lou, XU Jian-Tang, ZHANG Chao, ZHOU Yue, YE Shui-Feng, WU Ying-Bao, YANG Xin, JIANG Lei, HUANG Si-Qi, LI De-Fang
2022, 30(6): 1087-1095 |
doi:
10.3969/j.issn.1674-7968.2022.06.006 | Full text
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Abstract
Calmodulin-binding transcription factor (CAMTA) plays an important role in the regulation of plant growth and development and response to abiotic and biological stress. Jute (
Corchorus capsularis
) is an important commercial crop of bast fiber. In order to study the role of CAMTA in response to drought stress in jute, the '
Corchorus capsularis
179' was used as the material, primers were designed based on the sequence of
CAMTA
gene (CC.02G0003260) from the jute genome. The
CAMTA
gene was obtained by RT-PCR and named as
CAMTA1
(OK415793). Sequence analysis showed that the
CAMTA1
gene contained 13 exons and 12 introns, Its open reading frame was 3 051bp and encoded a protein containing 1 016 amino acids, which had the CG-1 domain, TIG domain, ANK repeat sequence and IQ motif of CAMTA proteins. Protein sequence alignment indicated that CAMTA1 had high homology with the protein of Malvaceae plants. qPCR analysis showed that
CAMTA1
gene was expressed in root, stem, leaf and pericarp. The expression of
CAMTA1
gene in leaves reached the highest at 6.0 h after drought stress induction. Fluorescence enzyme protein complementation assay suggested that CaMTA1 interacted with another stress-responsive transcription factor AP2/ERF to regulate plant growth, development and respond to both abiotic and biological stresses.These results provide a theoretical basis for further elucidating the molecular mechanism of
CAMTA1
gene involved in plant drought response.
Identification and Expression Analysis of Cellulose Synthase (CesA/Csl) Gene Superfamily Members in Peach (
Prunus persica
)
ZHANG Xing-Zhen, KANG Tong-Yang, BAO Ru, LIU Xin-Li, QIN Rong-Ling, ZHAO Cai-Ping
2022, 30(6): 1096-1111 |
doi:
10.3969/j.issn.1674-7968.2022.06.007 | Full text
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Abstract
The cellulose synthase (CesA) and cellulose synthase-like (Csl) gene families belonging to the cellulose synthase gene superfamily are responsible for the biosynthesis of cellulose, hemicellulose and pectin polysaccharides of the plant cell wall, and play critical roles in plant development, growth and evolution. In this study, 36 PpCesA/Csl gene family members were identified in the
Prunus persica
genome, encoding 394 to 1 527 amino acids, respectively. The average molecular weight of the proteins ranged from 44.85 to 171.80 kD, and the number of introns ranged from 4 to 16, containing 20 different motifs. The subcellular localization of PpCesA/ Csl protein was diverse and can be located in chloroplasts, golgi bodies, cell membranes, cytoplasm and mitochondria. Phylogenetic analysis showed that PpCesA/Csl could be divided into 7 subfamilies (CesA, CslA, CslB, CslC, CslD, CslE and CslG). All PpCesA/Csl proteins contained 7 transmembrane domains, of which 27 members contained cellulose synthase domain PF03552 and 9 members contained glycosyltransferase family 2 domain PF00535. In addition, the other 8 PpCesA subgroup members except PpCesA2 contained zinc finger domain zf-UDP, and the other 4 CslD subgroup members except PpCslD1 contained zinc finger domain zf-RING_4. The main conserved active sites of PpCesA/Csl protein were aspartic acid D, D, D residues, followed by QxxRW motif. Most PpCesA/Csl family members contained complete amino acid sequences of this active site. The results indicated that most of the CesA/Csl genes from peach were closely related to genes in
Arabidopsis thaliana
, but these families had unique characteristics in terms of their gene structure, chromosomal localization, phylogeny, and deduced protein sequences, suggesting that they had evolved through different processes. The transcriptome data of 'Qian Jianbai' peach during storage were used to analyze the expression characteristics of peach CesA/Csl members in mature fruit.The results showed that most peach CesA/Csl members were not expressed or very low expression level during the storage period in 'Qian Jianbai' fruit. Finally, 1 up-regulated member (
PpCslE7
), 3 down-regulated members (
PpCesA6
,
PpCesA8
,
PpCslG1
) and 1 relatively stable member (
PpCslD2
) were selected from the members with high expression levels in the transcriptome for analysis of expression characteristics. The qPCR analysis of
PpCesA6
,
PpCesA8
,
PpCslD2
,
PpCslE7
and
PpCslG1
in different tissues, fruits during different development and storage periods showed that the CesA/Csl genes were constitutively expressed at different levels in different organs. Furthermore, expression analysis of CesA/Csl genes in the fruit development stage showed
PpCesA6
,
PpCesA8
and
PpCslD2
all reached the peak expression at 65 d after flowering while
PpCslE7
and
PpCslG1
peaked at 80 d and 35 d after flowering, respectively. During fruit storage,
PpCslD2
and
PpCslE7
were up-regulated in both varieties, while PpCesA8 was down-regulated.
PpCslG1
was highly expressed in the early storage period of 'Qinwang' fruit, but extremely low in the storage period of 'Shahong' fruit. The family analysis and expression characteristics of CesA/Csl gene in peach provide basic data for further functional study of CesA/Csl gene in peach and other Rosaceae species.
Identification of NF-Y Gene Family and Expression Analysis in Response to Drought Stress in
Phoebe bournei
HAN Shuang, HAN Xiao, LI Yi-Bei, ZHANG Yu-Ting, ZHANG Jun-Hong, TONG Zai-Kang
2022, 30(6): 1112-1127 |
doi:
10.3969/j.issn.1674-7968.2022.06.008 | Full text
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Abstract
Nuclear Factor Y (NF-Y) is a transcription factor widely found in eukaryotes and involved in plant growth and development as well as biotic and abiotic stress responses.
Phoebe bournei
is an important economic timber tree in South China, but the growth and accumulation of wood are seriously affected by the lack of water. Exploration of drought-resistance response factors will provide support for improving the drought resistance of
P. bournei
. In this study, the whole genome identification and bioinformatics analysis of the NF-Y gene family in
P. bournei
were conducted, and the tissue expression specificity and expression pattern of PbNF-Ys under drought stress were analyzed by qPCR. The results showed that a total of 40 PbNF-Ys were identified in the whole genome of
P. bournei
, which were divided into 3 subfamilies and unevenly distributed on 11 chromosomes. The molecular weights of PbNF-Ys protein ranged from 10 774.45 (PbNF-YB11) to 39 576.26 D (PbNF-YA2), and all proteins were hydrophilic. The analysis of promoter elements showed that there were hormone response elements such as auxin, gibberellin and methyl jasmonate, light response elements, growth- and development-related elements and drought stress-related elements. Tissue expression analysis of PbNF-Ys in the root, stem, and leaf was carried out by qPCR. The result showed that PbNF-Ys presents tissue-specific expression patterns. Expression analysis of drought stress treatments showed that 17 PbNF-Ys were up-regulated induced by drought stress, 16 ones were down-regulated, and 7 ones presented no significant expression change. This study provides the reference basis for further study on the biological function and evolution of NF-Y gene family in
P. bournei
.
MSTN
Mutation Regulates Proliferation and Differentiation of Bovine (
Bos taurus
) Muscle-derived Satellite Cells Through SMAD2/SMAD3-
CDKN1C
GAO Li, GU Ming-Juan, YANG Miao-Miao, LIU Yun-Peng, BU Cai-Hong, CHENG Peng, BAI Chun-Ling
2022, 30(6): 1128-1139 |
doi:
10.3969/j.issn.1674-7968.2022.06.009 | Full text
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195
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Abstract
Myostatin (
MSTN
) is a negative regulator of muscle development. Studies have shown that it can regulate cell proliferation. In order to explore the further mechanism of
MSTN
mutant in regulating the proliferation and differentiation of muscle-derived satellite cells (MDSCs), in this study, the
MSTN
mutant (MT) and wild type (WT) bovine (
Bos taurus
) MDSCs were used to detect the cell cycle and gene expression in the process of proliferation and differentiation. Results of EdU proliferation assay showed that the proliferation index of
MSTN
mutant cells (0.78±0.0559) was significantly higher than that of wild-type cells (0.57±0.0366), indicating that
MSTN
mutant promoted the proliferation of MDSCs. When myogenic differentiation was induced, the
MSTN
mutant cells began to differentiate and formed the myotubes after 1day of induction, while the wild-type cells began to differentiate after 2 days of induction. Flow cytometry was used to further analyze the effect of myogenic induction on the cell cycle. Results also showed that the MT cells began to stagnate in the G1/S phase after 1 day of induction, and the cell cycle of WT cells stagnated after 2 days of induction. These results indicated that when cells were induced to differentiate,
MSTN
mutant cells exited from the cell cycle and entered to a differentiated state before wild-type cells. The expression of cell cycle-related genes and proteins was detected by qPCR and Western blot. Results showed that in
MSTN
mutant cells, the expression of CyclinA was significantly up-regulated (Relative expression=19.5), while the expression of cyclin-dependent kinase inhibitor 1C (
CDKN1C
) was significantly inhibited (Relative expression=0.009). These results showed that CyclinA and CDKN1C may play important roles in the regulation of
MSTN
mutant to the proliferation and differentiation of MDSCs. Online prediction through the JASPAR database showed that the key transcription factors downstream of
MSTN
, SMAD2/ SMAD3 may bind to the promoter of
CDKN1C
. ChIP-qPCR results demonstrated that the SMAD2/SMAD3 transcription factor combined with the promoter of
CDKN1C
thus to increase the expression of
CDKN1C.
In conclusion,
MSTN
mutant may inhibit the expression of
CDKN1C
gene by down-regulating the combination of SMAD2/SMAD3 transcription factor and
CDKN1C
promoter, thereby up-regulating the expression of
CyclinA
-
CDK2
, and promote DNA synthesis and cell cycle progress.This study discovered a new mechanism for
MSTN
mutant to promote muscle development, and provides a certain theoretical basis for the preparation of muscular gene-edited animals.
Tissue Expression, Functional Prediction of
CYP17A1
and
CYP19A1
Genes in Qianbei Ma Goat (
Capra hircus
) and Its Association Analysis with Litter Size
ZHANG Yan, CHEN Xiang, ZHOU Zhi-Nan, FU Kai-Bin, WANG Zhong, LI Shi-Jun, YANG Pei-Fang, HUI Mao-Mao
2022, 30(6): 1140-1152 |
doi:
10.3969/j.issn.1674-7968.2022.06.010 | Full text
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207
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Abstract
CytochromeP450c17 (CYP17A1) and cytochromeP450 aromatase (CYP19A1) were important for follicle development, ovulation and the secretion and synthesis of major reproductive hormones, and affected the reproductive performance of animals. In this study, healthy Qianbei Ma goat (
Capra hircus
) were taken as the research object. The tissue expression of
CYP17A1
and
CYP19A1
genes was detected by qPCR, and the SNP mutation sites were screened by PCR direct sequencing. The effect of SNPs on the lambing number of different parity of Qianbei Ma goat was analyzed by establishing a general linear model. The expression of
CYP17A1
and
CYP19A1
genes in various tissues and the correlation between SNPs and litter size were analyzed. The results showed that the expression of
CYP17A1
gene was the highest in the ovary of single and multiple lambs, and was extremely significantly higher than that of pituitary, hypothalamus, uterus and fallopian tube (
P
<0.01).
CYP19A1
gene expression was higher in the multi-lamb ovary and uterus, and both were higher than the corresponding single-lamb tissue (
P
<0.01). A total of 7 SNPs were detected in the
CYP17A1
gene coded region. g.59G>C, g.128G>A, g.129A>G and g.164T>C were all located in the first exon, g.2045G>A was in the second exon and g.4387G>A and g.4456C>T were in the sixth exon. Correlation analysis showed that the SNPs of
CYP17A1
gene were not correlated with the litter size of Qianbei Ma goat. A mutation site g.48818C>A was detected in the 9th exon of the coding region of
CYP19A1
gene and the number of lambs in the AA genotype was significantly higher than that of the CA genotype (
P
<0.05), but not significantly different from that of the CC genotype. The results showed that the expression of
CYP17A1
and
CYP19A1
genes in Qianbei Ma goat was the highest in the ovarian tissue of multiple lambs (
P
<0.01). There were only 4 goats in 150 with AA genotype g.48818C>A site, which was not representative and needs to be verified. This study provides basic data for further exploring the relationship between
CYP17A1
and
CYP19A1
gene variants and animal reproduction.
Effect of IP3R2 Domains on Ca
2+
Secretion of Sansui Duck (
Anas platyrhyncha domestica
) Endometrial Epithelial Cells
YANG Suan, TAN Guang-Hui, ZHANG Yi-Yu, YOU Min-Fang, LIAO Chao-Mei, TAN Yuan-Cheng, WANG Ying-Tong
2022, 30(6): 1153-1165 |
doi:
10.3969/j.issn.1674-7968.2022.06.011 | Full text
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Abstract
The inositol 1,4,5-trisphosphate receptor type 2 (IP3R2) is an intracellular Ca
2+
-release channel located on the endoplasmic reticulum (ER), which can regulate Ca
2+
release and affect eggshell quality. To elucidate the regulatory effect of IP3R2 protein domain on Ca
2+
secretion of duck (
Anas platyrhyncha domestica
) endometrial epithelial cells and its effect on calcium transport-related genes, in this study, the IP3R2 protein domain expression vector PCDNA3.1-
IP3R2
was constructed in laying duck (Sansui duck) and transfected into duck endometrial epithelial cells. The expression of IP3R2 protein domain was detected by Flag label detection kit (ELISA); Fluo-3/AM calcium fluorescence label was used to detect intracellular Ca
2+
content; qPCR was used to detect the overexpression levels of different domains and mRNA levels of ion transport-related genes. The results showed that overexpression of MIR, RYDR_ITPR (1), RYDR_ITPR(2), RIH_assoc and Ion_trans domains all caused the decrease of Ca
2+
concentration in duck endometrial epithelial cells; The expression levels of RYDR_ITPR(1) and IP3R2-Ion_trans were significantly negatively correlated with intracellular Ca
2+
concentration (
P
<0.05); The expression levels of RYDR_ITPR(2), RIH_assoc and 5 domains were significantly negatively correlated with intracellular Ca
2+
concentration (
P
<0.01); The expression of RYDR_ITPR(2) domain was significantly positively correlated with the expression of
RYR2
,
KCNJ15
and
CA2
genes (
P
<0.05); The overexpression levels of MIR-domain were significantly positively correlated with the gene expression levels of
IP3R1
,
CALB1
and
CA2
(
P
<0.05), and the overexpression levels of the 2 RYDR_ITPR domains were significantly positively correlated with the gene expression levels of
KCNJ15
and
RYR2
(
P
<0.05); The overexpression of RIH_assoc domain was significantly positively correlated with the expression of
IP3R2
and
ORAI1
genes (
P
<0.05); and the overexpression of Ion_trans domain was significantly positively correlated with the expression of
CALB1
,
SLC8A1
and
CA2
genes (
P
<0.05). The co-transfection level of the five domains were significantly positively correlated with
CFTR
gene expression, and negatively correlated with
TRPV6
gene expression (
P
<0.05). These results suggest that overexpression of 5 IP3R2 protein domains can cause extracellular Ca
2+
release in duck endometrial epithelial cells, and have different regulatory effects on the expression levels of 20 ion transport genes. This study provides a reference for improving eggshell quality of ducks in terms of molecular genetic marker selection.
Cloning and Expression Analysis of the Transcription Factor Gene
StSwi4
of
Setosphaeria turcica
BIAN Zhe, ZHOU Qi-Hui, LIU Yu-Wei, GONG Xiao-Dong, FAN Yong-Shan, HAN Jian-Min, GU Shou-Qin, DONG Jin-Gao
2022, 30(6): 1166-1173 |
doi:
10.3969/j.issn.1674-7968.2022.06.012 | Full text
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Abstract
CWI-MAPK (cell wall integrity-mitogen-activated protein kinase) cascade pathway is mainly involved in regulating the integrity of the cell wall, cell cycle and pathogenicity in phytopathogenic fungi. Swi4 is a key transcription factor downstream of the CWI-MAPK cascade. In
Saccharomyces cerevisiae
, the transcription factor ScSwi4 as a regulatory expression element participates in cell wall biosynthesis and cell cycle regulation, but the function of its homologous genes in filamentous pathogenic fungi is rarely reported. The northern leaf blight of corn is caused by
Setosphaeria turcica
. In this study, the
StSwi4
gene of
Setosphaeria turcica
was cloned. The analysis of the gene sequence and the characteristics of the encoded protein showed that the full length of the DNA sequence of the gene was 2 247 bp, and the full length of the cDNA sequence was 2 037 bp, containing 3 exons and 2 introns, encoding 678 amino acids; StSwi4 protein contained 1 KilA-N conserved domain and 2 ANK conserved domains. The phylogenetic relationship of the proteins revealed that the StSwi4 protein of
S. turcica
shared closer evolutionary relationship with
Alternaria gaisen
,
A. alternata
, and
S. solani
. The expression results of StSwi4-His fusion protein by IPTG showed that the fusion protein could be expressed in
Escherichia coli
.The purified protein was further obtained by nickel column affinity chromatography. The expression patterns of
StSwi4
gene at different developmental stages were analyzed by qPCR, and the highest expression level was found at conidial stage. This study clarified the structural characteristics and expression patterns of the transcription factor
StSwi4
gene, and provides basic material for further revealing its molecular mechanism in the pathogenesis of pathogens.
Effects of High-carbon Basal Fertilizers Combined with Nitrogen Reduction on Soil Fertility and Bacterial Diversity
SU Meng-Di, MA Xiao, HU Li-Tao, ZHAO Long-Jie, PENG Jun, WANG Huan-Huan, ZHANG Song-Tao
2022, 30(6): 1174-1185 |
doi:
10.3969/j.issn.1674-7968.2022.06.013 | Full text
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Abstract
Overuse of chemical fertilizers leads to deterioration of the soil environment and severely affects crop production. High-carbon basal fertilizer plays an important role in improving soil ecological environment of farmland, it has a greater impact on soil chemical properties and microbial diversity. This study adopted field test methods, 5 treatments were set up, including: NF (no fertilization), GCK (conventional fertilization of 111 kg/hm
2
pure nitrogen), G3 (high-carbon basal fertilizer 450 kg/hm
2
+99.9 kg/hm
2
pure nitrogen)(10% reduction in nitrogen), G5 (high-carbon basal fertilizer 750 kg/hm
2
+88.8 kg/hm
2
pure nitrogen)(20% reduction in nitrogen), G7 (high-carbon basal fertilizer 1 050 kg/hm
2
+77.7 kg/hm
2
pure nitrogen)(30% reduction in nitrogen). The effects on soil chemical properties were studied, and 16S rRNA high-throughput sequencing technology was used to analyze soil bacterial diversity. These results showed that: 1) High-carbon basal fertilizer combined with nitrogen reduction could increase soil pH, content of available nitrogen (N), potassium (K) and phosphorus (P). Among them, G7 had the best effect on improving soil fertility. The soil pH, contents of available nitrogen, potassium and phosphorus were increased under treatment of G7, which were 23.49%, 8.78%, 20.28% and 27.81% higher than those of CK, respectively (at 90 d after transplantation). 2) At the phylum levels, G7 increased the relative abundance of Proteobacteria, which were 9.93% and 2.28% higher than CK at 30 and 60 d after transplantation, respectively. At 60 d after transplantation, G3 increased the relative abundance of Bacteroidetes, which were 93.42% higher than CK. High-carbon basal fertilizer combined with nitrogen reduced the relative abundance of Acidobacteria, at 30 d after transplantation, which G7 decreased the most by 35.39%. At the genus levels, at 30 and 60 d after transplantation, G7 significantly increased the relative abundance of
Sphingomonas
and
Pseudarthrobacter
. At 60 d after transplantation, G7 decreased the relative abundance of
Rhodanobacter
. Among them, G7 had the greatest impact on bacterial diversity. 3) According to redundancy analysis, 86.64% of the change in the bacterial phylum communities was due to physical and chemical factors of the soils. There was a positive correlation between soil available N, K, P, pH and Proteobacteria, Bacteroidetes, Gemmatimonadetes. This study showed that 1 050 kg/hm
2
high-carbon basal fertilizer+77.7 kg pure nitrogen/hm
2
(30% reduction in nitrogen) had the best effect on improvement of soil microbial diversity and soil fertility. This study elaborates the mechanism underlying impact on soil microbial diversity and soil chemical properties by used high-carbon basal fertilizers.
Reviews and Progress
Plant MYC Transcription Factor: Structural Characteristics, Action Mechanism and Functional Regulation
ZOU Wen-Hui, SU Ya-Chun, REN Yong-Juan, ZHANG Chang, ZANG Shou-Jian, ZHAO Zhen-Nan, CHEN Yan-Ling, QUE You-Xiong
2022, 30(6): 1186-1201 |
doi:
10.3969/j.issn.1674-7968.2022.06.014 | Full text
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Abstract
Myelocytomatosis (MYC) transcription factors (TFs) are the core regulators of jasmonic acid (JA) signal transduction pathway. They are involved in plant growth and development, secondary metabolite synthesis, stress response, plant hormone signal transduction and the interaction between them. In this paper, research progress of plant MYC TFs from the aspects of the characteristics of sequence, structure and function were reviewed, as well as their action mechanism in biotic and abiotic stresses. This review accumulates basic data for further exploring the functional role and regulation mode of MYC TFs in plants.
Resources and Updated Technology
Development and Evaluation of the Detection Kit for Authentic Chinese Medicinal Materials Bulb of Edible Tulip
SUN Chuan-Bo, HE Yan-Fei, ZHANG Jing, WANG Yu-Wei, ZHAO Qun
2022, 30(6): 1202-1209 |
doi:
10.3969/j.issn.1674-7968.2022.06.015 | Full text
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Abstract
In recent years, the application of traditional Chinese medicine has become more and more popular, and the market demand is increasing, but the mixed phenomenon of counterfeits is serious. The development of identification kits based on DNA detection technology is of significant practical significance for this medicinal material. This study was based on the phylogenetic tree constructed in early stage of the experiment on
A. edulis
and its fakes, and specific PCR primers for
A. edulis
were designed on the basis of internal transcribed spacers (ITS) sequence analysis to optimize the use of specific detection reagents and reaction conditions. According to the evaluation criteria of
in vitro
diagnostic kits, a test kit was developed for
A. edulis
, and the test kit was evaluated for specificity, detection limit, repeatability, shelf life and stability. According to the test results, the kit had good specificity, the detection limit was 0.03 μg/μL, and excellent stability. The specific identification kit of authentic Chinese medicinal material
A. edulis
was accurate, fast and effective for the identification of
A. edulis
, and has broad application prospects.
Establishment and Application of Molecular Detection Technology System for Two Kinds Pathogens of Sugarcane (
Saccharum officinarum
) Pokkah boeng
LI Jie, LI Yin-Hu, PU Jia-Rong, ZHANG Rong-Yue, SHAN Hong-Li, LI Wen-Feng, WANG Xiao-Yan, PU Jin-An, HUANG Ying-Kun
2022, 30(6): 1210-1218 |
doi:
10.3969/j.issn.1674-7968.2022.06.016 | Full text
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171
)
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Abstract
Sugarcane (
Saccharum officinarum
) is the most important sugar crop in China. Sugarcane Pokkah boeng disease poses a serious threat to the high-quality development of the sucrose industry in China. Therefore, specific primers were designed based on the nuclear ribosomal DNA internal transcribed spacer (rDNA-ITS) sequences of 2 main pathogens of sugarcane Pokkah boeng
Fusarium verticillioides
and
Fusarium proliferatum
, respectively. The results showed that primers Fv-F3/Fv-R3 could amplify a specific amplification fragment of 400 bp from
F. verticillioides
and its infected sugarcane, but not other pathogens of sugarcane diseases. The detection sensitivity for genomic DNA of
F. verticillioides
was 30 pg/µL. Primers Fp-F4/Fp-R4 could amplify a specific amplification fragment of 362 bp from
F. proliferarum
and its infected sugarcane, but not other pathogens of sugarcane diseases. The detection sensitivity for genomic DNA of
F. proliferarum
was 30 pg/µL. A total of 117 samples with typical Pokkah boeng symptoms were collected from different main cultivated sugarcane varieties in different sugarcane areas of Yunnan Province were detected by PCR with these two pairs of specific primers. And the occurrence of the two main pathogens of sugarcane Pokkah boeng in this area was clarified. The results showed that 112 (95.7%) of the 117 samples were infected by
F. verticillioides
, 103 (88%) were infected by
F. proliferatum
. 103 (88%) were complex infected by
F. verticillioides
+
F. proliferatum
. The two pathogens were not detected in other 5 samples, which may be caused by other species. The PCR products of 23
F. verticillioides
and 19
F. proliferatum
from different main sugarcane varieties in different sugarcane regions were selected for sequencing and analysis. The results showed that the
F. verticillioides
and
F. proliferatum
amplification product sequences had 99.45%~100% similarity with
F. verticillioides
(KU508286) and 99.26%~100% similarity with
F. proliferatum
(MK252904), respectively. Some sequences were selected to construct phylogenetic tree, they were divided into
F. verticillioides
group and
F. proliferatum
group. The results of this study showed that the established detection system could accurately and quickly detect
F. verticillioides
and
F. proliferatum
. The detection rates of
F. verticillioides
and
F. proliferatum
were high from different main sugarcane varieties in different sugarcane areas of Yunnan Province. They were important pathogens of sugarcane Pokkah boeng in Yunnan province, and the compound infection was common. Among them,
F. verticillioides
was the dominant species in sugarcane areas such as Puer, Lincang, Honghe, and Yuxi sugarcane areas. However, the detection rate of
F. proliferatum
was also high in these sugarcane areas, and maybe there were other species of sugarcane Pokkah boeng pathogens might be present. This study provides technical support and practical basis for early diagnosis and timely prevention and control of these diseases.
Preparation and Immunogenicity Studies on mRNA Vaccine Based on
VP1
Gene of
Porcine foot
-
and
-
mouth disease type O virus
DONG Jin-Jie, WANG Hui-Bao, WANG Fan, DENG Rui-Xue, LIU Ping, CHEN Miao-Miao, LI Yang-Fan, ZHANG Yong
2022, 30(6): 1219-1227 |
doi:
10.3969/j.issn.1674-7968.2022.06.017 | Full text
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Abstract
Foot-and-mouth disease (FMD) is one of the most important infectious diseases causing significant economic losses to the swine (
Sus scrofa domesticus
) industry. Vaccine immunization is still the one of main ways to prevent and control foot-and-mouth disease. Because
Foot
-
and
-
mouth disease virus
is easy to mutate, the antigen mismatch between candidate vaccine strains and epidemic strains will affect the immune efficacy of vaccine and the effect of disease control. According to the molecular and functional characteristics of structural protein VP1 (viral structural protein) gene, using the inactivated
Porcine foot
-
and
-
mouth disease virus
type O strain (O /MYA98/BY/2010) as the template, the structural protein
VP1
gene was amplified and ligated into pSFV1 vector to construct the recombinant plasmid pSFV1-
VP1
. To obtain mRNA, the recombinant plasmid was treated by linearization and
in vitro
transcription, then the mRNA was transfected into baby hamster syrian kidney-21 (BHK-21) cells and verified its expression properly. After that, it was mixed with the liposome nanoparticles to immunize guinea pigs (
Cavia porcellus
), and the immune response and efficacy were detected. The results showed that the mRNA was expressed in BHK-21 cells after 24 h post-transfection evaluated by immunofluorescence assay (IFA) and Western blot; In guinea pigs immunized with the mRNA vaccine, specific antibody, neutralizing antibody, interleukin 4 (IL-4) and γ interferon (IFN-γ) in serum were significantly higher than those of guinea pigs. The mRNA vaccine could provide 4/4 protection against 50 times
GPID
50
(50% Guinea pig infectious dose) virus challenge in vaccinated guinea pigs, implying humoral and cellular immune response elicited by the developed mRNA vaccine with sound immunogenicity, which provides a new route for the development of foot-and-mouth disease emergency vaccine.
Establishment and Application of a Triplex TaqMan Probe Real-time Fluorescene Quantitative PCR Method for Detection of
Hemotrophic mycoplasma
from Swine (
Sus Scorfa
)
FU Yuan, SHI Tuan-Yuan, YUAN Xiu-Fang, XU Li-Hua, SUN Hong-Chao, WEI Qiang
2022, 30(6): 1228-1236 |
doi:
10.3969/j.issn.1674-7968.2022.06.018 | Full text
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Abstract
Porcine eperythrozoonosis is caused by
Mycoplasma suis
,
M. parvum
and a new species
Candidatus M. haemosuis
(CMh) isolated from Zhejiang province,which leads to anemia, jaundice and abortion of swine (
Sus Scorfa
). The prevalence and transmission of pig's hemoplasmas is not clear in China. In order to differential diagnose the main pathogens prevalence of porcine eperythrozoonosis, a triplex TaqMan probe fluorescence quantitative PCR (qPCR) was established based on glyceraldehyde-3-phosphate dehydrogenase (
GAPDH
) gene. According to the published
GAPDH
gene sequences of pig's hemotrophic mycoplasma, the primers and probes were designed by Beacon Designer 4.0 software for the 3 porcine hemoplasmas. By optimizing the concentration of Mg
2+
, hot-start r
Taq
, primers and probes, the triplex Taqman probe qPCR method was established, and the specificity, sensitivity, reproducibility of the method were verified. The results showed that the correlation coefficient (
R
2
) of the established triplex Taqman probe qPCR method was between 0.999 2~0.999 6, and the amplification efficiency was between 99.9%~103.2%. No amplification curve were found from DNA that had been extracted from the pig's samples of others common pathogens. The lowest detection limit of the method for
Mycoplasma suis
,
M. parvum
and CMh was 1 copy/μL. The coefficient of intra- and inter-group variations was between 0.31%~1.75%, indicating good repeatability. 148 blood samples from Zhejiang province pig farm, were detected by triplex Taqman probe qPCR and compared with double PCR, the results showed that the positive rates of
M. suis
,
M. parvum
and CMh were 50% (74/148) , 48.6% (72/148) and 64.9% (96/148), respectively, the mixed infection rate of the three pathogens was 29.7% (44/148). The positive rates of
M. suis
/
M. parvum
and CMh detected by duplex PCR were 29.1% (43/148) and 15.5% (23/148), respectively. The positive samples detected by duplex PCR were all positive by triplex Taqman probe qPCR. The method established in this study can be used for the clinical diagnosis of
M. suis
,
M. parvum
and CMh, which is a technical support for the epidemiological investigation, prevention and control of swine
Hemotrophic mycoplasma
.
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