Screening and Functional Analysis of Cellular Proteins Interacting with Chicken (Gallus gallus) Speckle-type POZ Protein
WANG Yan-Bi, ZHAO Cai-Qin, TANG Hong, ZHOU Lei, HAN Yi-Fan, XING Jing-Ru, SHI Hai-Ying, DUAN Zhi-Qiang*
Key Laboratory of Animal Genetics, Breeding and Reproduction in the Plateau Mountainous Region, Ministry of Education/Key Laboratory of Animal Genetics, Breeding and Reproduction of Guizhou Province/College of Animal Science, Guizhou University, Guiyang 550025, China
Abstract:The speckle-type POZ (pox virus and zinc finger protein) protein (SPOP) is a member of Cullin 3 family of E3 ubiquitin ligase, which promotes the ubiquitination and degradation of substrate by interacting with substrate protein, thus affecting the biological function of substrate protein. In this study, the recombinant eukaryotic expression vector pCMV-HA-SPOP of chicken (Gallus gallus) SPOP gene was constructed, and
pCMV-HA-SPOP and empty vector pCMV-HA were transfected into DF-1 respectively, and the total cellular
proteins were extracted. Co-immunoprecipitation (Co-IP) combined with mass spectrometry was used to
screen and identify the cellular proteins interacting with SPOP protein in chickens, and GO function
annotation, KEGG signaling pathway and protein interaction network analysis were carried out. Furthermore,
the interaction between chicken SPOP protein and the selected cell protein 26S proteasome non ATPase
regulatory subunit 11 (PSMD11) was verified by fluorescence co-localization and Co-IP test. The results
showed that the recombinant protein HA-SPOP was correctly expressed in cells, and mainly located in nucleus
and cytoplasm. A total of 158 cellular proteins interacting with chicken SPOP protein were screened by Co-IP
combined mass spectrometry, which mainly distributed in nucleus, cytoskeleton and cytoplasm, and
participated in biological processes such as enzyme activity, nucleic acid binding, protein process, and signal
pathways such as metabolism, ribosome composition and biological regulation. There were complex
interaction networks among cellular proteins interacting with chicken SPOP protein, among which proteasome
activator complex subunit 3 (PSME3), PSMD11 and H2A histone family, member Z (H2AFZ) may have direct
interaction with chicken SPOP protein. The results of fluorescence co-localization and Co-IP assay showed
that chicken SPOP protein could interact with PSMD11 protein and alter its intracellular localization. This
study provides research foundation for further exploring the biological function of chicken SPOP protein.
[1] 曹盼 .2019. hnRNPM 调控病毒 RNA 识别的分子机制[D].硕士学位论文, 武汉大学, 导师: 李姝, pp: 64-57. (Cao P.2019. Molecular mechanism of hnRNPM regulating viral RNA recognition[D]. Thesis for M.S., Wuhan University, Supervisor: Li S, pp: 64-57.) [2] 林婷, 曹心怡, 金晓锋 . 2021. E3 泛素连接酶接头蛋白 SPOP介导的底物非降解型泛素化修饰[J]. 中国生物化学与分子生物学报, 37(7): 874-882. (Lin T, Cao X Y, Jin XF.2021. Non-degradable ubiquitination modification of substrate mediated by E3 ubiquitin ligase linker protein SPOP[J]. Chinese Journal of Biochemistry and Molecular Biology, 37(7): 874-882.) [3] 王菲 .2020. SPOP 通过降解 MyD88 负反馈调节先天免疫的分子机制[D]. 博士学位论文, 中国农业科学院, 导师: 赵桂苹, pp: 32-73. (Wang F.2020. SPOP promotes degradation of MyD88 to suppress the innate immune response[D]. Thesis for Ph. D, Chinese Academy of Agricultural Sciences, Supervisor: Zhao G P, pp: 53-69.) [4] 张媛, 张荣平, 张志毕, 等 . 2021. 龙血竭凝胶对兔耳痤疮模型 TNF-α、IL-6 和 MFGE8 的影响[J]. 中国皮肤性病学杂志, 35(01): 30-36. (Zhang, Zhang R P, Zhang Z B, et al.2021. Effects of resina draconis gel on TNF-α, IL-6 level in serum and MFGE8 expression in the skin from rabbit 's ear acne model[J]. The Chinese Journal of Dermatovenereology, 35(01): 30-36.) [5] Belkina A C, Denis G V.2012. BET domain co-regulators in obesity, inflammation and cancer[J]. Nature Reviews Cancer, 12(7): 465-477. [6] Bouchard J J, Otero J H, Scott D C, et al.2018. Cancer mutations of the tumor suppressor SPOP disrupt the formation of active, phase-separated compartments[J]. Mol Cell, 72(1): 19-36.e8. [7] Chakrabarti R, Ji W K, Stan R V,et al.2018. INF2-mediated actin polymerization at the ER stimulates mitochondrial calcium uptake, inner membrane constriction, and division[J]. The Journal of Cell Biology, 217(1): 251-268. [8] Cheng J, Guo J, Wang Z, et al.2018. Functional analysis of Cullin 3 E3 ligases in tumorigenesis[J]. Biochimica et Biophysica Acta (BBA) -Reviews on Cancer, 1869(1): 11-28. [9] Cuneo M J, Mittag T.2019. The ubiquitin ligase adaptor SPOP in cancer[J]. The FEBS journal, 286(20): 3946-3958. [10] Ding F, Li Y, Hou X, et al.2016. Oxymatrine inhibits microglia activation via HSP60-TLR4 signaling[J]. Biomedical Reports, 5(5): 623-628. [11] Guillamot M, Ouazia D, Dolgalev I, et al.2019. The E3 ubiquitin ligase SPOP controls resolution of systemic inflammation by triggering MYD88 degradation[J]. Nature Im‐munology, 20(9): 1196-1207. [12] Hjorth-Jensen K, Maya-Mendoza A, Dalgaard N, et al.2018.SPOP promotes transcriptional expression of DNA repair and replication factors to prevent replication stress and genomic instability[J]. Nucleic Acids Research, 46(18): 9484-9495. [13] Hung S H, Wong R P, Ulrich H D, et al.2017. Monoubiquitylation of histone H2B contributes to the bypass of DNA damage during and after DNA replication[J]. Nucleic Acids Research, 114(11): E2205-E2214. [14] Hernández-Muñoz I, Lund A H, van der Stoop P, et al.2005.Stable X chromosome inactivation involves the PRC1 polycomb complex and requires histone MACROH2A1 and the CULLIN3/SPOP ubiquitin E3 ligase[J]. Proceedings of the National Academy of Sciences of the USA, 102(21): 7635-7640. [15] Janouskova H, El Tekle G, Bellini E, et al.2017. Opposing effects of cancer-type-specific SPOP mutants on BET protein degradation and sensitivity to BET inhibitors[J]. Nature Medicine, 23(9): 1046-1054. [16] Jin X, Shi Q, Li Q, et al.2020. CRL3-SPOP ubiquitin ligase complex suppresses the growth of diffuse large B-cell lymphoma by negatively regulating the MyD88/NF-κB signaling[J]. Leukemia, 34(5): 1305-1314. [17] Jin X, Wang J, Gao K, et al.2017. Dysregulation of INF2-mediated mitochondrial fission in SPOP-mutated prostate cancer[J]. PLOS Genetics, 13(4): e1006748. [18] Jin X, Wang J, Li Q, et al.2019. SPOP targets oncogenic protein ZBTB3 for destruction to suppress endometrial cancer[J]. American Journal of Cancer Research, 9(12): 2797-2812. [19] Kanehisa M, Sato Y, Furumichi M, et al.2019. New approach for understanding genome variations in KEGG[J]. Nucleic Acids Research, 47(D1): D590-D595. [20] Khalil R.2018. Ubiquitin-proteasome pathway and muscle atrophy[J]. Adv Exp Med Biol, 1088: 235-248. [21] Li G, Ci W, Karmakar S, et al.2014. SPOP promotes tumorigenesis by acting as a key regulatory hub in kidney cancer[J]. Cancer Cell, 25(4): 455-468. [22] Li Q, Wang F, Wang Q, et al.2020. SPOP promotes ubiquitination and degradation of MyD88 to suppress the innate immune response[J]. PLOS Pathog, 16(5): e1008188. [23] Luo J, Chen B, Gao C X, et al.2018. SPOP promotes FADD degradation and inhibits NF-κB activity in non-small cell lung cancer[J]. Biochemical and Biophysical Research Communications, 504(1): 289-294. [24] Lv Z, Wang Z, Luo L, et al.2019. Spliceosome protein Eftud2 promotes colitis-associated tumorigenesis by modulating inflammatory response of macrophage[J]. Mucosal Immunology, 12(5): 1164-1173. [25] Mani R S.2014. The emerging role of speckle-type POZ protein (SPOP) in cancer development[J]. Drug Discovery Today, 19(9): 1498-1502. [26] Marzahn M R, Marada S, Lee J, et al.2016. Higher-order oligomerization promotes localization of SPOP to liquid nuclear speckles[J]. The EMBO Journal, 35(12): 1254-1275. [27] Moyal L, Lerenthal Y, Gana-Weisz M, et al.2011. Requirement of ATM-dependent monoubiquitylation of histone H2B for timely repair of DNA double-strand breaks[J]. Molecular Cell, 41(5): 529-542. [28] Ou H L, Schumacher B.2018. DNA damage responses and p53 in the aging process[J]. Blood, 131(5): 488-495. [29] Tian W, Trader D J.2020. Discovery of a small molecule probe of Rpn-6, an essential subunit of the 26S proteasome[J]. ACS Chemical Biology, 15(2): 554-561. [30] Wang F, Li Q, Wang Q, et al.2020. Association of SPOP expression with the immune response to salmonella infection in chickens[J]. Animals (Basel), 10(2): 307-315. [31] Xiao M, Fried J S, Ma J,et al.2021. A disease-relevant mutation of SPOP highlights functional significance of ATM-mediated DNA damage response[J]. Signal Transduction and Targeted Therapy, 6(1): 17-24. [32] Yerlikaya A, Kanbur E, Stanley B A, et al.2021. The Ubiquitin-proteasome pathway and epigenetic modifications in cancer[J]. Anti-cancer Agents in Medicinal Chemistry, 21(1): 20-32. [33] Zhang J, Bu X, Wang H,et al.2018. Cyclin D-CDK4 kinase destabilizes PD-L1 via cullin 3-SPOP to control cancer immune surveillance[J]. Nature, 553(7686): 91-95. [34] Zhang P, Gao K, Tang Y,et al.2014. Destruction of DDIT3/CHOP protein by wild-type SPOP but not prostate cancer-associated mutants[J]. Human Mutation, 35(9): 1142-1151. [35] Zhang Q, Shi Q, Chen Y,et al.2009. Multiple Ser/Thr-rich degrons mediate the degradation of Ci/Gli by the Cul3-HIB/SPOP E3 ubiquitin ligase[J]. Proceedings of the National Academy of Sciences of the USA, 106(50): 21191-21196. [36] Zhou Y, Wang X, Huang X,et al.2020. High expression of COPB2 predicts adverse outcomes: A potential therapeutic target for glioma[J]. CNS Neuroscience & Therapeutics, 26(3): 309-318.