Effects of Arsenic Containing Acid Mine Drainage on Soil Microbial Community Structure in Paddy Field
YANG Ze-Yan1, ZHANG Chi-Peng1,2,*, HUANG Chen-Chen1, ZHANG Kai-Xuan1, CHEN Shuang1
1 College of Resources and Environmental Engineering, Guizhou University, Guiyang 550025, China; 2 Key Laboratory of Karst Geological Resource and Environment, Ministry of Education, Guizhou University, Guiyang 550025, China
Abstract:The properties of farmland soil polluted by acid mine drainage (AMD) change greatly, which is potentially harmful to microbial growth. In order to study the impact of arsenic containing AMD on the microbial community structure in paddy field, soil samples were collected from contaminated and clean fields near one arsenic rich coal mine of Xingren city, Guizhou province. The physical and chemical properties of overlying water and soil were determined. The high-throughput sequencing technology was used to analyze the microbial community composition and diversity changes in contaminated and clean areas. The results showed that the soil in contaminated area was acidified, the pH ranged from 3.60 to 4.40, and the average contents of iron and arsenic were 114.26 g/kg and 98.70 mg/kg respectively. While the average soil pH in clean area was 5.93, and the average contents of the two elements were 106.25 g/kg and 21.63 mg/kg, respectively. Proteobacteria was the main category of microorganisms in the two areas, with an average relative abundance of 29.96%. The diversity of soil microbial community in S1 and S2 of contaminated area was significantly different from that in clean area (P<0.05). Compared with the clean area, the relative abundances of acidophilic genera Gp1, Gp2 and Gp13 increased by 3.23%, 2.88% and 1.38%, respectively. Desulfosporosinus and Desulfitobacterium were only detected in the soil of contaminated area. The abundances of Geobacter and Anaeromyxobacter in iron reducing bacteria group were relatively high. Their average proportions in contaminated area were 1.58% and 1.60%, respectively, and 1.62% and 3.02% respectively in clean area. Redundancy analysis and Spearman correlation analysis showed that soil acidification and arsenic contamination were the main environmental pressures on soil microbial community structure. The study can help to further reveal the relationship between the variation of soil environmental conditions contaminated by arsenic containing AMD and the change of microbial community structure, and provides a theoretical basis for the ecological restoration of contaminated field.
[1] 陈俊峰. 2016. 高砷煤矿区土壤-水稻体系中砷的赋存形态及其分布特征研究[D]. 硕士学位论文, 贵州大学, 导师: 吴攀, 张翅鹏, pp. 16-36. (Chen J F.2016. Occurrence forms and distribution characteristics of arsenic in soil rice system in high arsenic coal mining area[D]. Thesis for M.S., Guizhou University, Supervisor: Wu P, Zhang C P, pp. 16-36. ) [2] 陈智, 蒋先军, 罗红燕, 等. 2008. 土壤微生物生物量在团聚体中的分布以及耕作影响[J]. 生态学报, 28(12): 5964-5969. (Chen Z, Jiang X J, Luo H Y, et al.2008. Distribution of soil microbial biomass within soil water-stable aggregates and the effects of tillage[J]. Acta Pedologica Sinica, 28(12): 5964-5969. ) [3] 狄霖, 刘玲玲, 钟志仁, 等. 2019. 水稻田铁氧化菌的丰度及微生物群落结构组成[J]. 江苏农业科学, 47(010): 296-300. (Di L, Liu L L, Zhong Z R, et al.2019. Abundance of iron oxidizing bacteria and composition of microbial community structure in paddy field[J]. Jiangsu Agricultural Sciences, 47(010): 296-300. ) [4] 丁翠, 李琦, 郭楚玲, 等. 2019. 酸性矿山废水对稻田土壤微生物菌群结构的影响[J]. 环境科学学报, 39(9): 3080-3089. (Ding C, Li Q, Guo C L, et al.2019. Responses of microbial communities in paddy soils to the intrusion of acid mine drainage[J]. Acta Scientiae Circumstantiae, 39(09): 3080-3089. ) [5] 韩永和, 贾梦茹, 傅景威, 等. 2017. 不同浓度砷酸盐胁迫对蜈蚣草根际微生物群落功能多样性特征的影响[J]. 南京大学学报(自然科学), 53(02): 275-285. (Han Y H, Jia M R, Fu J W, et al.2017. Impacts of arsenate concentrations on functional diversities of rhizosphere microbial communities of Pteris vittata[J]. Journal of Nanjing University (Natural Science), 53(02): 275-285. ) [6] 理鹏, 吴建强, 沙晨燕, 等. 2020. 粪肥和有机肥施用对稻田土壤微生物群落多样性影响[J]. 环境科学, 41(09): 4262-4272. (Li P, Wu J Q, Sha C Y, et al.2020. Effects of manure and organic fertilizer application on soil microbial community diversity in paddy fields[J]. Environmental Science, 41(09): 4262-4272. ) [7] 李媛. 2016. 内蒙古河套盆地高砷含水系统的微生物特征及生物地球化学效应[D]. 博士学位论文, 中国地质大学(北京), 导师: 郭华明, pp. 33-61. (Li Y.2016. Microbial characteristics and biogeochemical effects of high arsenic water bearing system in Hetao Basin, Inner Mongolia[D]. Thesis for Ph.D., China University of Geosciences (Beijing), Supervisor: Guo H M, pp. 33-61.) [8] 林先贵, 胡君利. 2008. 土壤微生物多样性的科学内涵及其生态服务功能[J]. 土壤学报, 45(05): 892-900. (Lin X G, Hu J L.2008. Scientific connotation and ecological service function of soil microbial diversity[J]. Acta Pedologica Sinica, 45(05): 892-900.) [9] 刘彩霞, 董玉红, 焦如珍. 2016. 森林土壤中酸杆菌门多样性研究进展[J]. 世界林业研究, 29(06): 17-22. (Liu C X, Dong Y H, Jiao R Z.2016. Research progress in Acidobacteria diversity in forest soil[J]. World Forestry Research, 29(06): 17-22.) [10] 刘莹, 王丽华, 郝春博, 等. 2014. 酸性矿山废水库周边土壤微生物多样性及氨氧化菌群落研究[J]. 环境科学, 35(06): 2305-2313. (Liu Y, Wang L H, Hao C B, et al.2014. Microbial diversity and ammonia-oxidizing microorganism of a soil sample sear an acid mine drainage[J]. Environmental Science, 35(06): 2305-2313.) [11] 鲁如坤. 2000. 土壤农业化学分析方法[M]. 中国农业科技出版社, 北京. pp. 106-109, 146-147. (Lu R K.2000. Analysis Methods of Soil Agrochemistry[M]. China Agricultural Science and Technology Press, Beijing. pp. 106-109, 146-147. ) [12] 王磊, 李泽琴, 姜磊. 2009. 酸性矿山废水的危害与防治对策研究[J]. 环境科学与管理, 034(010): 82-84. (Wang L, Li Z Q, Jiang L.2009. Acidic mine waste water hazards and countermeasures research[J]. Environmental Science And Management, 34(10): 82-84. ) [13] 王晓洁, 卑其成, 刘钢, 等. 2021. 不同类型水稻土微生物群落结构特征及其影响因素[J]. 土壤学报, 58(03): 767-776. (Wang X J, Bei Q C, Liu G, et al.2021. Microbial abundance and community composition in different types of paddy soils in China and their affecting factors[J]. Acta Pedologica Sinica, 58(03): 767-776.) [14] 王兆苏, 王新军, 陈学萍, 等. 2011. 微生物铁氧化作用对砷迁移转化的影响[J]. 环境科学学报, 31(2): 328-333. (Wang Z S, Wang X J, Chen X P, et al.2011. The effect of microbial iron oxidation on arsenic mobility and transformation[J]. Acta Scientiae Circumstantiae, 31(2): 328-333.) [15] 钟松雄, 尹光彩, 陈志良, 等. 2017. Eh、pH和铁对水稻土砷释放的影响机制[J]. 环境科学, 38(06): 2530-2537. (Zhong S X, Yin G C, Chen Z L, et al.2017. Influencing mechanism of Eh, pH and iron on the release of arsenic in paddy soil[J]. Environmental Science, 38(06): 2530-2537.) [16] Alazard D, Joseph M, Battaglia-Brunet F, et al.2010. Desulfosporosinus acidiphilus sp. nov.: A moderately acidophilic sulfate-reducing bacterium isolated from acid mining drainage sediments[J]. Extremophiles, 14(3): 305-312. [17] Baker B J, Banfield J F.2003. Microbial communities in acid mine drainage[J]. Fems Microbiology Ecology, 44(2): 139-152. [18] Bickel S, Or D.2020. Soil bacterial diversity mediated by microscale aqueous-phase processes across biomes[J]. Nature Communications, 11(1): 116-124. [19] Cherry D S, Currie R J, Soucek D J.2001. An integrative assessment of a watershed impacted by abandoned mined land discharges[J]. Environmental Pollution, 111(3): 377-388. [20] Das S, Jean J, Kar S, et al.2013. Changes in bacterial community structure and abundance in agricultural soils under varying levels of arsenic contamination[J]. Geomicrobiology Journal, 30(7): 635-644. [21] Ding L J, Su J Q, Xu H J, et al.2015. Long-term nitrogen fertilization of paddy soil shifts iron-reducing microbial community revealed by RNA-13C-acetate probing coupled with pyrosequencing[J]. Isme Journal, 2015, 9(3): 721-734. [22] Eichorst S A, Kuske C R, Schmidt T M.2011. Influence of plant polymers on the distribution and cultivation of bacteria in the Phylum Acidobacteria[J]. Applied & Environmental Microbiology, 77(2): 586-596. [23] Fierer N, Lauber C L, Ramirez K S, et al.2012. Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients[J]. The ISME Journal, 6(5): 1007-1017. [24] Kumar U, Shahid M, Tripathi R, et al.2017. Variation of functional diversity of soil microbial community in sub-humid tropical rice-rice cropping system under long-term organic and inorganic fertilization[J]. Ecological Indicators, 73: 536-543. [25] Lauber C L, Hamady M, Knight R, et al.2009. Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale[J]. Applied and Environmental Microbiology, 75(15): 5111-5120. [26] Li G, Sun G X, Williams P N, et al.2011. Inorganic arsenic in Chinese food and its cancer risk[J]. Environment International, 37(7): 1219-1225. [27] Liu C, Yu H Y, Liu C, et al.2015. Arsenic availability in rice from a mining area: Is amorphous iron oxide-bound arsenic a source or sink[J]. Environmental Pollution, 199(apr. ): 95-101. [28] Lopes A R, Manaia C M, Nunes O C.2018. Bacterial community variations in an alfalfa-rice rotation system revealed by 16S rRNA gene 454-pyrosequencing[J]. Fems Microbiology Ecology, (3): 650-663. [29] Navarro M C, Pérez-Sirvent C, Martínez-Sánchez M J, et al.2007. Abandoned mine sites as a source of contamination by heavy metals: A case study in a semi-arid zone[J]. Journal of Geochemical Exploration, 96(2008): 183-193. [30] Oremland R S, Stolz J F.2005. Arsenic, microbes and contaminated aquifers[J]. Trends in Microbiology, 13(2): 45-49. [31] Paul D, Kumbhare S V, Mhatre S S, et al.2016. Exploration of microbial diversity and community structure of Lonar Lake: The only hypersaline meteorite crater lake within basalt rock[J]. Frontiers in Microbiology, 6: 1553-1564. [32] Rinklebe J, Shaheen S M, Yu K W, et al.2016. Release of As, Ba, Cd, Cu, Pb, and Sr under pre-definite redox conditions in different rice paddy soils originating from the USA and Asia[J]. Geoderma, 270(S1): 21-32. [33] Sánchez-Andrea I, Stams A J M, Hedrich S, et al.2015. Desulfosporosinus acididurans sp. nov.: An acidophilic sulfate-reducing bacterium isolated from acidic sediments[J]. Extremophiles: Life Under Extreme Conditions, 19(1): 39-47. [34] Scott R M, Aaron L S, Kenneth L J, et al.2009. Bar-coded pyrosequencing reveals shared bacterial community properties along the temperature gradients of two alkaline hot springs in Yellowstone National Park[J]. Applied and Environmental Microbiology, 75(13): 4565-4572. [35] Sun W, Xiao T, Sun M, et al.2015. Diversity of the sediment microbial community in the Aha Watershed (Southwest China) in response to acid mine drainage pollution gradients[J]. Applied & Environmental Microbiology, 81(15): 4874-4884. [36] Swathi A T, Rakesh M, Premsai S B, et al.2013. Chronic N-amended soils exhibit an altered bacterial community structure in Harvard Forest, MA, USA.[J]. FEMS Microbiology Ecology. 83(2): 478-493. [37] Thomas S H, Sanford R A, Amos B K, et al.2010. Unique ecophysiology among U(VI)-reducing bacteria as revealed by evaluation of oxygen metabolism in Anaeromyxobacter dehalogenans strain 2CP-C[J]. Applied and Environmental Microbiology, 76(1): 176-183. [38] Villemur R, Lanthier M, Beaudet R, et al.2006. The desulfitobacterium genus[J]. Fems Microbiology Reviews, 30(5): 706-733. [39] Wan M X, Yang Y, Qiu G Z, et al.2009. Acidophilic bacterial community reflecting pollution level of sulphide mine impacted by acid mine drainage[J]. Journal of Central South University of Technology, 16(02): 223-229. [40] Wang H, Zeng Y, Guo C, et al.2018. Bacterial, archaeal, and fungal community responses to acid mine drainage-laden pollution in a rice paddy soil ecosystem[J]. Science of the Total Environment, 616-617(mar): 107-116. [41] Wu T, Chellemi D O, Graham J H, et al.2008. Comparison of soil bacterial communities under diverse agricultural land management and crop production practices[J]. Pedobiologia, 55(2): 293-310. [42] Wyatt H H, Curtis J R, Rytas V, et al.2008. Environmental and anthropogenic controls over bacterial communities in wetland soils[J]. Proceedings of the National Academy of Sciences of the USA, 105(46): 17842-17847. [43] Xu X Y, Mcgrath S P, Meharg A A, et al.2008. Growing rice aerobically markedly decreases arsenic accumulation[J]. Environmental Science & Technology, 42(15): 5574-5579. [44] Zhang C P, Wu P, Tang C Y, et al.2013. The study of soil acidification of paddy field influenced by acid mine drainage[J]. Environmental Earth Sciences, 70(7): 2931-2940. [45] Zhao F J, Ma Y B, Zhu Y G, et al.2015. Soil contamination in China: Current status and mitigation strategies[J]. Environmental Science & Technology, 49(2): 750-759.