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2025年8月30日 星期六
  2018, Vol. 26 Issue (9): 1577-1587    
  研究论文与报告 本期目录 | 过刊浏览 | 高级检索 |
大豆孢囊线虫大豆和烟草群体的转录组比较分析
宋雯雯1,齐娜伟2,梁晨2,段方猛1,赵洪海1
1. 青岛农业大学
2.
Comparative Analysis of the Transcriptomes Between Soybean (Glycine max) and Tobacco (Nicotiana tabacum) Population of Heterodera glycines
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摘要 摘 要 大豆孢囊线虫(Heterodera glycines, soybean cyst nematode, SCN)为植物专性内寄生线虫,主要危害大豆(Glycine max)等豆科植物,烟草(Nicotiana tabacum)是其非寄主。但近年来,本课题组在山东地区发现一个特殊的SCN群体(简称SCNT),其可以寄生烟草,但对大豆的致病性很差。为揭示SCNT与普通大豆孢囊线虫群体(SCN)对同一寄主致病性存在显著差异的分子机制,本研究采用Illumina平台HiSeqTM 2500高通量测序技术对两个群体的2龄幼虫(second stage juvenile, J2)进行转录组测序和生物信息学分析,并采用qRT-PCR对转录组测序结果进行验证。结果表明,SCN和SCNT共检测出1 628个差异表达基因(differentially expressed genes, DEGs),其中1 347个基因在SCNT中上调表达,281个下调表达。对DEGs进行基因本体(Gene Ontology, GO)分析发现,被注释到分子功能的核糖体结构组成的DEGs数目最多,高达284个;其次是生物学进程的翻译过程,为211个;京都基因与基因组百科全书(Kyoto Encyclopedia of Genes and Genomes, KEGG)富集分析表明,639个DEGs定位到277个代谢途径分支,其中参与到核糖体和氧化磷酸化途径的差异基因最多。另外,与线虫生长发育和寄生相关的代谢途径以及一些编码食道腺细胞分泌蛋白的DEGs同样被显著富集。qRT-PCR分析数据与转录组测序结果相关性较好(R2=0.98),说明转录组测序数据可靠。本研究首次研究了不同致病力群体SCN和SCNT在转录水平上的差异,为进一步解析SCN致病性差异形成的分子机制提供科学依据。
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宋雯雯
齐娜伟
梁晨
段方猛
赵洪海
关键词 大豆孢囊线虫(SCN)SCN大豆群体SCN烟草群体转录组测序    
Abstract:Abstract Soybean cyst nematode (SCN, Heterodera glycines) seriously endangers the yield and quality of crops. SCN as one plant-specific endoparasitic nematode, is the most destructive pathogen of soybean (Glycine max) and other legumes, while tobacco (Nicotiana tabacum) is its non-host. However, in recent years, our research team found a special SCN population (SCNT) in Shandong province, which could infect tobacco, but whose pathogenicity to soybean was very poor. In order to reveal the molecular mechanism of significant difference in pathogenicity of the same host infected by SCNT and the normal SCN population, the Illumina platform HiSeqTM 2500 high-throughput sequencing technique was conducted to detect transcriptional profile of the 2nd Stage Juvenile (second stage juvenile, J2), which were derived from SCN and SCNT, respectively. qRT-PCR was performed to validate the result of transcriptome sequencing. The result demonstrated that there were a total of 1 628 differentially expressed genes (DEGs) between SCN and SCNT, among which, 1 347 DEGs were up-regulated in SCNT with 281 DEGs being down-regulated. GO (Gene Ontology) analysis was carried out to classify functions of DEGs. In the category of biological processes, the relative up-regulated and down-regulated genes were significantly enriched in the translation process, including 139 and 72 DEGs respectively. The two GO terms under cell component representing cytosolic small ribosomal subunit and the cytosolic large ribosomal subunit were notably enriched in the relative up-regulated genes, while other apparent GO terms in the relative down-regulated genes associated with DEGs were ribosome and cytosolic small ribosomal subunit. A notable number of genes (204 up-regulated and 80 down-regulated) were categorized under the GO term of structural constituent of ribosome belonging to molecular function. Furthermore, gene expression patterns were integrated with biochemical pathway from KEGG (Kyoto Encyclopedia of Genes and Genomes) analysis. 639 DEGs might involve in 277 different metabolic pathway branches, among which, a significant number of genes participating ribosome pathway were enriched, including 210 relative up-regulated and 73 relative down-regulated genes. Other pathway of oxidative phosphorylation was notably enriched. 76 DEGs (70 up-regulated and 6 down-regulated) were categorized under phosphorylation. 6 down-regulated genes were localized to cytochrome b gene, cytochrome c oxidase CO I, CO Ⅱ, CO Ⅲ subunit, NADH oxidoreductase ND5 subunit and ATP enzyme subunit, while ND1, ND2, ND3, and subunits involved in NADH oxidoreductase were up regulated. In addition, pathways associated with nematode growth and development and parasitism (such as Nicotinate and nicotinamide metabolism, Glutathione metabolism and Metabolism of xenobiotics by cytochrome P450) were enriched, followed by 13 DEGs encoding esophageal gland cell secretory proteins. There were only two genes encoding secretory proteins (pel2 and Hgg-20) suppressed, while the other 11 genes performed different degrees of down-regulation in SCNT population. The qRT-PCR data were correlated with transcriptome sequencing result, since the correlation coefficient R2=0.98, which indicated transcriptome sequencing data was reliable. This is the first report describing differences on transcriptional levels of different pathogenic SCN and SCNT populations, which will provide a scientific basis for further analysis on molecular mechanisms of pathogenicity differences of SCN.
Key wordsHeterodera glycines (SCN)    SCN population    SCNT population    Transcriptome sequencing
收稿日期: 2017-11-21      出版日期: 2018-08-06
基金资助:公益性行业(农业)科研专项;山东省“泰山学者”建设工程专项
通讯作者: 赵洪海     E-mail: hhzhao@qau.edu.cn
引用本文:   
宋雯雯 齐娜伟 梁晨 段方猛 赵洪海. 大豆孢囊线虫大豆和烟草群体的转录组比较分析[J]. , 2018, 26(9): 1577-1587.
链接本文:  
http://journal05.magtech.org.cn/Jwk_ny/CN/     或     http://journal05.magtech.org.cn/Jwk_ny/CN/Y2018/V26/I9/1577
 
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