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2025年5月9日 星期五
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鸡下丘脑高丰度差异性表达let-7a的组织表达谱及其功能分析
王乐乐1,李国喜2,康相涛2,张锁2,孙桂荣2
1. 河南农业大学
2. 河南农业大学牧医工程学院
Tissue Expression Profile and Function Analysis of Abundance and Differential Expression Let-7a from Chicken(Gallus domesticus) Hypothalamus
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摘要 前期对固始鸡1日龄和36周龄下丘脑miRNA的Solexa测序分析表明,let-7a为鸡(Gallus domesticus)下丘脑发育过程高丰度差异性表达miRNA。为全面了解鸡let-7a的功能,采用实时定量PCR检测了1日龄和36周龄固始鸡两个发育阶段13种组织中let-7a的表达情况。结果表明:let-7a在所检测的组织中呈广泛性表达,其在下丘脑中的表达趋势与高通量测序结果一致;1日龄时,let-7a在下丘脑和肾脏中高丰度表达,在肺中低丰度表达,其他组织中适度表达;36周龄时,let-7a在各组织中的表达量都较低,除了在肺中的表达量较1日龄上升外,其余各组织的表达量都下降。同时,采用两种算法预测了let-7a的靶基因,并对107个共有靶基因进行了基因本体功能(GO)富集分析和京都基因与基因组百科全书(KEGG) 通路分析,结果显示:靶基因主要在生物学过程调节相关的生物学过程中富集,尤其是与矿物质和磷代谢相关的调节过程;且在粘着斑、细胞外基质受体互作、丝裂原活化蛋白激酶(MAPK)信号通路等3个通路中显著富集(P<0.01)。这些结果为进一步研究let-7a功能提供了有益线索。
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王乐乐
李国喜
康相涛
张锁
孙桂荣
关键词 let-7a组织表达谱功能预测    
Abstract:Previous Solexa sequencing analysis from miRNA in the hypothalamus of 1-day-old and 36-weeks Gushi chickens demonstrated that let-7a is one of the most abundant and differential expression miRNA during development of chicken(Gallus domesticus) hypothalamus. For a thorough knowledge of let-7a function, the let-7a expression profiles in 13 tissues in two stages of Gushi chicken were characterized by Real-time quantitative PCR. The results indicated that the let-7a was widely expressed in the detection tissue and the expression in hypothalamus from the Solexa sequencing was consistent with those from Real-time RT-PCR measures. Let-7a was varied among different tissues,with most abundant in the hypothalamus and kidney, low abundance in the lung and moderate expression in other tissues at 1-day-old chickens. Except for the lung, the let-7a expression was lower at the age of 36 weeks than that at 1 day. In addition, The total 107 target genes were predicted by two kinds of algorithm overlap with gene ontology(GO) and kyoto encyclopedia of genes and genomes(KEGG) analysis, the results showed that target genes were rich in the regulation biological processes, especially in the minerals and phosphorus metabolism regulation process and significantly existed in the regulatory pathway of focal adhesions, extracellular matrix receptor interaction, the mitogen-activated protein kinases(MAPK) signaling pathway (P<0.01). These results provide useful clues for further study of let-7a function.
Key wordsChicken    Let-7a    Tissue expression    Function prediction
收稿日期: 2012-07-20     
ZTFLH:  S831  
通讯作者: 康相涛   
引用本文:   
王乐乐1,李国喜2,康相涛2,张锁2,孙桂荣2. 鸡下丘脑高丰度差异性表达let-7a的组织表达谱及其功能分析[J]. , 2013, 21(3): 313-319.
链接本文:  
http://journal05.magtech.org.cn/Jwk_ny/CN/     或     http://journal05.magtech.org.cn/Jwk_ny/CN/Y2013/V21/I3/313
 
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