Transcriptome Analysis of the Candidate Key Genes Regulating Post-harvest Chilling Injury and Firmness in Peach (Prunus persica)
ZHANG Zhi-Gang1,2, CHEN Yu-Feng2, WANG Chang-Jiang2, XU Jin2, JIANG Yan-Wei2, ZHENG Ya-Qin1, LIU Zhen-Ning1, CHEN Shou-Bing1, LIU Yi-Hua1,*, XU Meng1,*
1 College of Agriculture and Forestry Sciences, Linyi University, Linyi 276000, China; 2 Zoucheng Natural Resources and Planning Bureau, Jining 273500, China
Abstract:Cold-sensitive fruit stored at low temperatures after harvest is vulnerable to fruit chilling injury, and low-temperature conditioning (LTC) treatment has notable effect in alleviating chilling injury of cold-sensitive fruit such as peach (Prunus persica), but slight fruit softening occurs in the initial stage of storage. In this study, weighted gene co-expression network analysis (WGCNA) was used to identify gene modules that were highly correlated with chilling injury and firmness phenotypes. The analysis revealed that WRKY transcription factor PpWRKY43 and P. persica auxin response factor 1 (PpARF1) might be involved in postharvest chilling injury regulation by regulating cold-regulated 413 inner membrane protein 2 (PpCOR413-2) and the lipoxygenase 5 (PpLOX5), and NAC transcription factor PpNAC5 might be involved in postharvest softness of peach fruit by regulating P. persica pectate lyase 2 (PpePL2). The results of this study provides basic data for postharvest preservation and reduction of peach fruit injury.
[1] 陈洪彬, 王慧玲, 蒋璇靓, 等. 2021. 1-MCP对采后'红心'番石榴果实软化的影响[J]. 中国农学通报, 37(18): 51-56. (Chen H B, Wang H L, Jiang K X, et al.2021. 1-Methylcyclopropene: Effect on the postharvest softening of 'Hongxin' guava fruits[J]. Chinese Agricultural Science Bulletin, 37(18): 51-56.) [2] 魏宝东, 周爽, 郝义. 2017. 逐步降温结合1-MCP处理对李果冷害及品质影响[J]. 食品工业科技, 38(6): 319-323. (Wei B D, Zhou S, Hao Y, et al.2017. Effects of gradually cooling binding 1-MCP treatment on chilling injury and storage quality of Angeleno plums[J]. Science and Technology of Food Industry, 38(6): 319-323.) [3] 邢震. 2010. 保鲜剂、降温方式结合冰温对大久保桃采后品质影响的研究[D]. 硕士学位论文, 石河子大学, 导师: 江英, pp. 12-33. (Xing Z.2010. Effect of preservative treatment cooling methods and ice temperature on quality of okubao peach after harvest[D]. Thesis for M.S., Shihezi University, Supervisor: Jiang Y, pp. 12-33) [4] 赵海悦, 魏创奇, 尚忠林, 等. 2021. 柿果实采后软化的生理生化和分子生物学研究进展[J]. 植物生理学报, 57(5): 993-1000. (Zhao H Y, Wei C Q, Shang Z L, et al.2021. Research progress on physiology, biochemistry and molecular biology of postharvest persimmon fruit during softening[J]. Plant Physiology Communications, 57(5): 993-1000.) [5] Aghdam M S, Mohammadkhani N.2014. Enhancement of chilling stress tolerance of tomato fruit by postharvest brassinolide treatment[J]. Food and Bioprocess Technology, 7(3): 909-914. [6] Carrasco-Orellana C, Stappung Y, Mendez-Yañez A, et al.2018. Characterization of a ripening-related transcription factor FcNAC1 from Fragaria chiloensis fruit[J]. Scientific Reports, 8(1): 1-12. [7] Diao D, Hu X, Guan D, et al.2020. Genome-wide identification of the ARF (auxin response factor) gene family in peach and their expression analysis[J]. Molecular Biology Reports, 47(6): 4331-4344. [8] Du M, Jia X, Li J.2020. Regulation effects of 1-MCP combined with fow microcirculation of sterilizing medium on peach shelf quality[J]. Scientia Horticulturae, 260: 108867. [9] Kim D, Langmead B, Salzberg S L.2015. HISAT: A fast spliced aligner with low memory requirements[J]. Nature Methods, 12(4): 357-360. [10] Kong X M,Ge W Y,Wei B D, et al.2020. Melatonin ameliorates chilling injury in green bell peppers during storage by regulating membrane lipid metabolism and antioxidant capacity[J]. Postharvest Biology and Technology, 170: 111315. [11] Lurie S, Crisosto C H.2005. Chilling injury in peach and nectarine[J]. Postharvest Biology and Technology, 37(3): 195-208. [12] Lv K, Li J, Zhao K, et al.2020. Overexpression of an AP2/ERF family gene, BpERF13, in birch enhances cold tolerance through upregulating CBF genes and mitigating reactive oxygen species[J]. Plant Science, 292: 110375. [13] Migicovsky Z, Yeats T H, Watts S, et al.2021. Apple ripening is controlled by a NAC transcription factor[J]. Frontiers in Genetics, 12: 671300. [14] Pertea M, Pertea G M, Antonescu C M, et al.2015. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads[J]. Nature Biotechnology, 33(3): 290-295. [15] Tareen M J, Abbasi N A, HafIz I A.2012. Postharvest application of salicylic acid enhanced antioxidant enzyme activity and maintained quality of peach cv. 'Flordaking' fruit during storage[J]. Scientia Horticulturae, 142(13): 221-228. [16] Villarreal N M, Bustamante C A, Civello P M, et al.2010. Effect of ethylene and 1-MCP treatments on strawberry fruit ripening[J]. Journal of the Science of Food and Agriculture, 90(4): 683-689. [17] Wang D Z, Jin Y N, Ding X H, et al.2017a. Gene regulation and signal transduction in the ICE-CBF-COR signaling pathway during cold stress in plants[J]. Biochemistry (Moscow), 82: 1103-1117. [18] Wang K, Yin X R, Zhang B, et al.2017b. Transcriptomic and metabolic analyses provide new insights into chilling injury in peach fruit[J]. Plant Cell & Environment, 40(8): 1531-1551. [19] Xu Z, Dai J, Kang T, et al.2022. PpePL1 and PpePL15 are the core members of the pectate lyase gene family involved in peach fruit ripening and softening[J]. Frontiers in Plant Science, 13: 844055. [20] Yang Q, Zhang Z, Rao J, et al.2013. Low‐temperature conditioning induces chilling tolerance in 'Hayward' kiwifruit by enhancing antioxidant enzyme activity and regulating en‐dogenous hormones levels[J]. Journal of the Science of Food and Agriculture, 93(15): 3691-3699. [21] Yang X Z, Wei W W, Lv P, et al.2015. Effectiveness of 1-methylcyclopropene treatment on peach fruit (Prunus persica L.) for extending storage life[J]. Advanced Materials Research, 1089: 159-162. [22] Zhang M X, Shi Y N, Liu Z M, et al.2022. An EjbHLH14-EjHB1-EjPRX12 module is involved in methyl jasmonate alleviation of chilling-induced lignin deposition in loquat fruit[J]. Journal of Experimental Botany, 73(5): 1668-1682. [23] Zhao K X, Chu S S, Zhang X D, et al.2020. AtWRKY21 negatively regulates tolerance to osmotic stress in Arabidopsis[J]. Environmental and Experimental Botany, 169: 103920. [24] Zheng Y, Jiao C, Sun H, et al.2016. iTAK: A program for genome-wide prediction and classification of plant transcription factors, transcriptional regulators, and protein kinases[J]. Molecular Plant, 9(12): 1667-1670. [25] Zheng Y Q, Liu Z N, Wang H, et al.2022. Transcriptome and genome analysis to identify C2H2 genes participating in low-temperature conditioning-alleviated postharvest chilling injury of peach fruit[J]. Food Quality and Safety, 6: 1-10.