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Association Analysis Between the Single Nucleotide Polymorphism of ESR Genes and Egg Production in Laying Pigeon(Columba livia) |
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Abstract Estrogen receptor (ESR) is a ligand-dependent transcription factor of nuclear receptor superfamily. Numerous studies showed that ESR genes areclosely related to animal reproduction activities. In order to analyze the correlation between the single nucleotide polymorphisms (SNPs) of ESR genes and egg-production trait of laying pigeon (Columba livia), the SNPs of partial ESR gene fragments were screened by the first-generation sequencing in 215 Taiping King pigeons(C. livia). Ten SNPs were detected in the threefragments, T129416C was located in intron 6 of ESRα gene, the other nine SNPs were detected in ESRβ. They were T365C, A388G, C389A and A429G in intron 1, G451A, G577Ain exon 2, T672C and A923C in intron 3, and T17167C in exon 5 of ESRβ gene. Among these ten sites, three of the mutations were located in exon, but only G577A made amino acid change from isoleucine (Ile) to valine (Val). These two amino acids are non-polar and hydrophobic, it is a common missense mutation that has little effect on protein polarity in vivo. All the ten sites were in balance based on the Hardy-Weinberg equilibrium test. The results of Linkage disequilibrium analysis among the ten sites showed that the sites S1 and S10 were not meaningful linkage disequilibrium relative to others, because there were greater physical distances between the two sits and the others. The sites between S2 and S4, S9 were strong linkage disequilibrium (D′≈1 and r2>0.8) and site S2 could be completely represented by S4 or S9. The correlation analysis between SNPs of ESR genes and egg production showed that only site S8 was significantly correlated to egg production, genotype AB of this site was significantly higher than AA in egg production (P<0.01), while BB genotype was higher than AA genotype and lower than AB genotype, but the differences were not significant (P>0.05). The results indicate that the S8 site of ESRβ gene can be used as a molecular marker for egg-production traits in MAS breeding of laying pigeon.
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Received: 18 September 2015
Published: 05 February 2016
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[1]Kuiper G G J M, Lemmen J G, Carlsson B O, et al.(1998). Interaction of estrogenic chemicals and phytoestrogens with estrogen receptor β[J]. Endocrinology, 139(10): 4252-4263.
[2]刘海港, 李宏梅, 王树迎, 等.(2013). 山羊β雌激素受体多克隆抗体的制备及免疫组化方法的建立[J]. 畜牧兽医学报, 44(2): 302-308. (Liu H G, Li H M, Wang S Y. (2013). Preparation of polyclonal antibody against goat estrogen receptor beta and its application in immunohistochemistry assay[J]. Acta Veterinaria et Zootechnic Sinica, 44(2): 302-308. )
[3]张桂香, 赵学东.(2002). 雌激素受体亚型的研究现状[J]. 国外医学: 妇产科学分册, 29: 352-355.(Zhang G X, Zhang X D. (2002). The research of estrogen receptor subtypes[J]. Foreign Medical Sciences(Obstet Gynecol Fascicle, 29: 352-355.)
[4]Gibson D A, Saunders P T K.(2012). Estrogen dependent signaling in reproductive tissues–a role for estrogen receptors and estrogen related receptors[J]. Molecular and cellular endocrinology, 348(2): 361-372.
[5]Hamilton K J, Arao Y, Korach K S.(2014). Estrogen hormone physiology: reproductive findings from estrogen receptor mutant mice[J]. Reproductive biology, 14(1): 3-8.
[6]Krege J H, Hodgin J B, Couse J F, et al.(1998). Generation and reproductive phenotypes of mice lacking estrogen receptor β[J]. Proceedings of the National Academy of Sciences, 95(26): 15677-15682.
[7]张德祥, 张细权, 宋焕禄.(2001). 优质鸡育种的技术现状及发展趋势[J]. 中国家禽, 23(23): 15-17.(Zhang D X, Zhang X Q, Song H L. (2001). Technology statement and developing trends of quality chicken breeding[J]. China Poultry, 23(23): 15-17. )
[8]汪应梅.(2009). 如何提高蛋鸭产蛋量[J]. 湖南农业, (1): 17-17.(Wang Y M. (2009). How to improve production of laying duck[J]. Journal of Hunan Agriculture, (1): 17-17. )
[9]卫龙兴, 徐永飞, 唐则裔.(2013). 商品蛋鸽双母配对养殖技术[J]. 现代农业科技, (23): 276-276. (Wei X L, Xu Y F, Tang Z Y. (2013). The breeding technology of pairs of commercial laying pigeon[J]. Modern Agricultural Sciences and Technology, (23): 276-276.)
[10]鲁翠云, 张明昭, 顾颖, 等.(2013). 8种鲤养殖品种线粒体Cyt b基因的遗传多样性和系统进化分析[J]. 水产学报, 37(3).(Lu C Y, Zhang M Z, Gu Y. (2013). Genetic diversity and phylogenetic analysis of eight Cyprinoid aquaculture breeds based on mitochondrial Cyt b gene[J]. Journal of Fisheries of China, 37(3). )
[11]王秀坤.(2001). 重组人的GABAA受体复合物A2 (α1 148异亮氨酸突变为缬氨酸), (151 天冬氨酸突变为天冬酰胺和 149苏氨酸突变为谷氨酰胺)β2γ2s 的药理学特征[J]. 中国药学, 10: 45-48. (Wang X K. (2001). Characterization of the Pharmacology of Recombinant Human GABAA Receptor Complexes Containing A2 (α1 isoleucin 148 to valine) or A2 (α1 asparatic acid 151 to asparagin) or A2 (α1 threonine 149 to glutamine) in Combination with β2γ2s Subunits[J]. Journal of Chinese Pharmaceutical Sciences, 10: 45-48.)
[12]仇海荣, 缪扣荣.(2013). 江苏汉族人群中 MDR1 单核苷酸多态性及单倍型连锁不平衡研究[J]. 中国科技论文, 1-7. (Chou H R, Miu K R. (2013). The Single Nucleotide Polymorphism and Haplotype Analysis of MDR1 in Jiangsu Han Population of China[J]. China sciencepaper, 1-7. )
[13]周靖晶.(2013). 中国人群年龄相关性黄斑变性与基因及环境因素的关联研究[D]. 硕士毕业论文, 华中科技大学, 2013. 1-39. (Zhou J J. (2013). association of genetic and environmental factors with age-related macular degeneration in a Chinese population[D]. Thesis for M.S., Huazhong University of Science and Technology, Prof.Wang Zhi, 2013.1-39. )
[14]Ardlie KG, Kruglyak L, Seielstad M (2002).Patterns of linkage disequilibrium in the human genome[J]. Nature Reviews Genetics, 3: 299-309.
[15]Kruglyak L (1999).Prospects for whole-genome linkage disequilibrium mapping of common disease genes[J]. Nature genetics, 22: 139-144.
[16]Hamblin MT, Close TJ, Bhat PR, et al.(2010). Population structure and linkage disequilibrium in US barley germplasm: implications for association mapping[J]. Crop Science, 50: 556-566.
[17]Lee HR, TH K, KC C (2012).Functions and physiological roles of two types of estrogen receptors, ERα and ERβ, identified by estrogen receptor knockout mouse[J]. Lab Anim Res, 28: 71-76.
[18]Lee GS, YW KH, Choi KC, et al.(2005). Estrogen receptor alpha pathway is involved in the regulation of Calbindin-D9k in the uterus of immature rats[J]. Toxicological Sciences An Official Journal of the Society of Toxicology, 84: 270-277.
[19]Drummond A E, Fuller P J.(2012). The importance of ERβ signalling in the ovary[J]. Journal of endocrinology, 205(1): 15-23.
[20]Kmiec M, Dvorak J, Vrtkova I.(2002). Study on a relation between estrogen receptor (ESR) gene polymorphism and some pig reproduction performance characters in Polish Landrace breed[J]. Czech Journal of Animal Science, 47(5): 189-193.
[21]WANG H, YUAN X, SONG T.(2012). Correlation Analysis between Polymorphism of GHR Gene and Its Meat Performance in Zhuanghe Dagu Chicken[J]. China Poultry, 18: 012.
[22]李文涵.(2010). 猪ESRβ, RNF4及COX2 基因单核苷酸多态性基因型与繁殖性状相关性[D]. 硕士学位论文, 中兴大学, 1-56. (Li W H. (2010). SNP Genotypes of ESRβ, RNF4 and COX2 Genes Associated with Reproduction Traits in Pigs[D]. Thesis for M.S., NCHU, 1-56.)
[23]TANG Q, ZHU W, WU X, et al.(2009). Research on the Association between the Polymorphism of ESR Gene and Egg Performance in Wenchang Chicken[J]. Journal of Yunnan Agricultural University, 1: 015.
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