Transcriptome Analysis of Large-fruit Mutant During the Early Development of Fruit in 'Tonami' Apple (Malus domestica)
ZHANG Xue-Ying1, LI Zhen-Xia2, YIN Bao-Ying1, LI Zhong-Yong1, ZHANG Yuan1, XU Ji-Zhong1,*, LI Qi-Wei1, SHAO Jian-Zhu1
1 College of Horticulture, Hebei Agricultural University, Baoding 071001, China; 2 College of Bioscience and Bioengineering, Hebei University of Science and Technology, Shijiazhuang 050018, China
Abstract:The 'Tonami' large-fruit mutant derived from the natural mutant of 'Tonami' apple. To analysis the reason of large-fruit mutant of 'Tonami' apple (Malus domestica 'Tonami'), fruit size, cell ploidy, cellular structure and transcriptome in the early development of fruit were studied in 'Tonami' apple and its large-fruit mutant. Results showed that weight of average single fruit of 'Large-fruit Tonami' apple was significantly higher than the contrast (P<0.05), was 1.5 times of the contrast. There was no significant difference in the cell size of the fruits, but the number of cells in the 'Large-fruit Tonami' at 28 d after full bloom and at the ripeness was significantly higher than that of 'Tonami' (P<0.05). Cell ploidy were the same of 'Large-fruit Tonami' apple and contrast. Transcriptome of fruit after full bloom 14 and 28 d were compared with 'Tonami' and 'Large-fruit Tonami' apple. Fifty-one differential expressed genes (DEGs) were identified. By KEGG analysis, these unigenes were found to be implicated in plant hormone signal transduction pathway. Five genes that might be related to large-fruit mutant were selected from that pathway, these genes were mainly involwed in cytokinin signaling transduction pathway and ethylene signaling transduction. The study showed that large-fruit mutant of 'Tonami' apple might be related to the changes of plant hormones in fruit development. This study would provide basic information for further studying the cytological and molecular basis on apple large-fruit mutant.
张学英, 李振侠, 尹宝颖, 李中勇, 张媛, 徐继忠, 李琦玮, 邵建柱. ‘斗南'苹果大果芽变果实发育早期转录组分析[J]. 农业生物技术学报, 2019, 27(12): 2140-2149.
ZHANG Xue-Ying, LI Zhen-Xia, YIN Bao-Ying, LI Zhong-Yong, ZHANG Yuan, XU Ji-Zhong, LI Qi-Wei, SHAO Jian-Zhu. Transcriptome Analysis of Large-fruit Mutant During the Early Development of Fruit in 'Tonami' Apple (Malus domestica). 农业生物技术学报, 2019, 27(12): 2140-2149.
[1] 党江波, 郭启高, 向素琼, 等. 2019a. 大果无核红肉枇杷新品种'华金无核1号'[J/OL]. 园艺学报, 46(S2): 1-3. (Dang J B, Guo Q G, Xiang S Q, et al.2019a. A new red-fleshed and seedless loquat cultivar with large fruits 'Huajin Wuhe 1'[J/OL]. Acta Horticulturae Sinica, 46(S2): 1-3.) [2] 党江波, 郭启高, 向素琼, 等. 2019b. 大果无核枇杷新品种'华玉无核1号'[J/OL]. 园艺学报, 46(S2): 1-2. (Dang J B, Guo Q G, Xiang S Q, et al.2019b. A new seedless loquat cultivar 'Huayu Wuhe 1' [J/OL]. Acta Horticulturae Sinica, 46(S2): 1-2.) [3] 刘俊仙, 熊发前, 刘欣, 等. 2016. 果蔗拔地拉及其芽变株系的SCoT、BPS和URP联合分子鉴定[J]. 基因组学与应用生物学, 35(01): 190-197. (Li J X, Xiong F Q, Liu X, et al.2016. Molecular identification of fruit sugarcane badila and its bud sports with combination of SCoT, BPS and URP markers[J]. Genomics and Applied Biology, 35(01): 190-197. [4] 李运合, 张智, 吴青松, 2015. 杧果乙烯受体基因MiETR1b 的分离与表达分析[J]. 园艺学报, 42(6): 1021-1030. (Li Y H, Zhang Z, Wu Q S, 2015. Isolation and expression analysis of an ethylene receptor gene MiETR1b in mango[J]. Acta Horticulturae Sinica, 42(6): 1021-1030.) [5] 李正理. 1978. 植物切片技术[M]. 北京: 北京科学出版社, pp. 24-35. (Li Z L.1978. Plant Sectioning Technique[M]. Beijing Science Press, Beijing, China, pp. 24-35.) [6] 马跃, 宣景宏, 张志宏. 2015. 苹果多倍体育种研究进展[J]. 北方果树, (06): 1-3. (Ma Y, Xuan J H, Zhang Z H. 2015. Progresses on polyploid breeding of apple[J]. Northern Fruits, (06): 1-3.) [7] 武军凯, 王海静, 吕换男, 等, 2018. '鸭梨'及其自交亲和性芽变'金坠梨'花粉转录组测序比较分析[J]. 果树学报, 35(08): 917-927. (Wu J K, Wang H J, Lv H N, et al.2018. Sequencing analysis of pollen transcriptome of 'Yali' and its spontaneous self-compatible mutant 'Jinzhui'[J]. Journal of Fruit Science, 35(08): 917-927.) [8] 薛应龙. 1985. 植物生理学实验手册[M]. 上海: 上海科学技术出版社, pp. 334-336. (Xue Y L.1985. Plant Physiology Experiment Manual [M]. Shanghai Scientific & Technical Publishers, Shanghai, China, pp. 334-336. ) [9] 鄢新民, 李学营, 王献革, 等. 2011. 苹果芽变及芽变选种回顾[J]. 河北农业科学, 15(5): 75-77. (Yan X M, Li X Y, Wang X G, et al.2011. Review on bud mutant selection of apple[J]. Journal of Hebei Agricultural Sciences, 15(5): 75-77.) [10] 闫忠业, 伊凯, 刘志, 等, 2007. 富士系苹果叶片气孔观察[J]. 北方园艺, (09): 1-3. (Yan Z Y, Yi K, Liu Z, et al., 2007. The observation on stoma in leaves of Fuji apple strains[J]. Northern Horticulture, (09): 1-3.) [11] 张树军. 2011. '南果梨'大果型芽变的细胞、生理及分子基础研究[D]. 硕士学位论文, 南京农业大学. 导师: 张绍玲. PP. 77-84. (Zhang S J.2011. Studies on the cellular, physiological and molecular basis of large-fruit bud mutant of 'Nanguoli'[D]. Thesis for M.S., Nanjing Agricultural University . Suppervisor: Zhang S L. PP. 77-84.) [12] Jiang S, An H S, Luo J, et al.2018. Comparative analysis of transcriptomes to identify genes associated with fruit size in the early stage of fruit development in Pyrus pyrifolia[J]. International Journal of Molecular Scienc, 19(8): 2342-2357. [13] Goffinet M C, Robinson T L, Lakso A N.1995. A comparison of 'Empire' apple fruit size and anatomy in unthinned and hand-thinned trees[J]. Journal of Horticultural Science, 70(3): 375-387. [14] Gu C, Zhou Y H, Shu W S, et al.2018. RNA-Seq analysis unveils gene regulation of fruit size cooperatively determined by velocity and duration of fruit swelling in peach[J]. Physiologia Plantarum, 164: 320-336. [15] Harada T, Kurahashi W, Yanai M, et al.2005. Involvement of cell proliferation and cell enlargement in increasing the fruit size of Malus species[J]. Scientia Horticulturae (Amsterdam), 105(4): 447-456. [16] Malladi, Hirst P M.2010. Increase in fruit size of a spontaneous mutant of' 'Gala' apple (Malus domestica Borkh.) is facilitated by altered cell production and enhanced cell size[J]. Journal of Experimental Botany, 61: 3003-3013. [17] Malladi A, Johnson L K.2011. Expression profiling of cell cycle genes reveals key facilitators of cell production during carpel development, fruit set, and fruit growth in apple (Malus domestica Borkh.)[J]. Journal of Experimental Botany, 62(1): 205-219. [18] Tannakay Y, Sano T, Tamaoki M, et al.2006. Cytokinin and auxin inhibit abscisic acid-induced stomatal closure by enhancing ethylene production in Arabidopsis[J]. Journal of Experimental Botany, 57: 2259-2266.