Effector Screening of Puccinia triticina by Nicotiana benthamiana
QI Yue1, ZHANG Yue1, LI Jian-Yuan1,2, YANG Wen-Xiang1,*, LIU Da-Qun3,*
1 Department of Plant Pathology, Hebei Agricultural University/Biological Control Center of Plant Diseases and Plant Pests of Hebei Province/National Engineering Research Center for Agriculture in Northern Mountainous Areas, Baoding 071001, China; 2 Hebei Xingtai College, Xingtai 054000, China; 3 Graduate School of Chinese Academy of Agricultural Sciences, Beijing 100081, China
Abstract:Wheat (Triticum aestivum) leaf rust is an airborne fungal disease caused by Puccinia triticina, which occurs worldwide and causes yield loss up to 15%~40% or even more in wheat production. Utilization of resistance cultivars is the most effective, safe and economic method. However, the pathogenicity of Puccinia triticina is diversified and the toxicity is frequently mutated. Therefore, the wheat leaf rust resistance is continuously lost. To explore the molecular mechanism of wheat leaf rust pathogenesis is particularly important for the effective control of wheat leaf rust. In this study, based on a total of 9 samples transcriptome data of P. triticinia monospora 08-5-9-2 (KHTT), 13-5-28-1 (JHKT) and 13-5-72-1 (THSN) in dormant spore, germinating summer spore and haustorium formation period, effector proteins were initially screened by SignalP 4.1、TargetP 1.1, TMHMM 2.0 and EffectorP 2.0. Effector proteins of 357 candidates were obtained, and 20 candidate effector proteins were screened for their gradually up-regulated expression level during the interaction between Puccinia triticina and susceptible material Thatcher. The 20 candidate effector proteins were further screened by Nicotiana benthamiana and Bax and INF1 which could cause allergic necrosis, and results showed that the 20 candidates were all effector proteins. The above results showed that the heterologous expression system was a powerful tool for screening the effector protein of specific parasite, which could provide reference for further research on the pathogenicity of effector proteins.
[1] 何燕华. 2014. 植物病原效应蛋白功能研究方法[J]. 现代农业科技, (4): 116-120. (He Y H. 2014. Research methods of plant pathogen effector proteins function[J]. Modern Agricultural Technology, (4): 116-120.) [2] 刘芮, 王梧嵋, 许强, 等. 2015. 小麦条锈菌吸器效应蛋白的筛选与鉴定. 真菌及真菌病害[C]//. 海南大学(eds.). 中国植物病理学会2015年学术年会论文集. 海南大学, 海南. pp. 157., pp.157. [3] 彭居俐, 何中虎. 2009. 近期国际和国内小麦形势分析[J]. 麦类作物学报, 29(1): 179-182. (Peng J L, He Z H.2009. Perspective on global and Chinese wheat industry[J]. Journal of Triticeae Crops, 29(1): 179-182.) [4] 宋平, 谭成龙, 郭嘉, 等. 2016. 小麦条锈菌效应蛋白基因PSTG_23616的时空表达特征分析[J]. 西北农业学报, 25(9): 1279-1288. (Song P, Tan C L, Guo J, et al.2016. Temporal and spatial expression characteristics of wheat stripe rust effector gene PSTG_23616[J]. Acta Agriculture Boreali-occidentalis Sinica, 25(9): 1279-1288.) [5] 汤春蕾. 2013. 条锈菌与小麦互作中效应蛋白及诱导寄主细胞坏死基因的鉴定与功能分析[D].博士学位论文, 西北农林科技大学, 导师: 康振生, pp. 1. (Tang C L. 2013. Characterization and founction analyses of host cell death inducing genes in wheat and Puccinia striiformis interactions[D]. Thesis for Ph.D., Northwest A&F University, Supervisor: Kang Z S, pp. 1.) [6] 王新乐. 2008. 大豆疫霉RXLR效应分子的筛选及Avh238的功能研究[D]. 硕士学位论文, 南京农业大学, 导师: 王源超. pp. 1. (Wang X L. 2008. Screening of Phytophthora sojae RXLR effectors and functional study of Avh238[D]. Thesis for M.S., Nanjing Agricultural College, Supervisor: Wang Y C, pp. 1.) [7] 吴宽. 2016. 小麦条锈菌吸器转录组分析及PSTha5a23基因的功能研究[D]. 博士学位论文, 西北农林科技大学, 导师: 康振生, pp. 1. (Wu K. 2016. The haustorial transcriptome of Puccinia striiformis f.sp.tritici (pst) and founction of PSTha5a23[D]. Thesis for Ph.D., Northwest A&F University, Supervisor: Kang Z S, pp. 1.) [8] Boumela I, Guillemin Y, Guerin J F, et al.2009. The Bcl-2 family pathway in gametes and preimplantation embryos[J]. Gynécologie Obstétrique & Fertilité, 2009, 37(9): 720-732. [9] Bruce M, Neugebauer K A, Joly D L, et al.2014. Using transcription of six Puccinia triticina races to identify the effective secretome during infection of wheat[J]. Frontiers in Plant Science, 4: 520. [10] Cantu D, Segovia V, MacLean D, et al.2013. Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors[J]. BMC Genomics, 14(1): 270. [11] Catanzariti A M, Dodds P N, Lawrence G J, et al.2006. Haustorially expressed secreted proteins from flax rust are highly enriched for avirulence elicitors[J]. Plant Cell, 18: 243-256. [12] Catanzariti A M, Dodds P N, Ve T, et al.2010. The AvrM effector from flax rust has a structured c-terminal domain and interacts directly with the M resistance protein[J]. Molecular Plant-Microbe Interactions, 23(1): 49-57. [13] Chang J H, Urbach J M, Law T F, et al.2005. A high-throughput, near-saturating screen for type Ⅲ effector genes from Pseudomonas syringae[J]. Proceedings of the National Academy of Sciences of the USA, 102(7): 2549-2554. [14] Chen J, Upadhyaya N M, Ortiz D, et al.2017. Loss of AvrSr50 by somatic exchange in stem rust leads to virulence for Sr50 resistance in wheat[J]. Science, 358(6370): 1607-1610. [15] Cheng Y, Wu K, Yao J, et al.2017. PSTha5a23, a candidate effector from the obligate biotrophic pathogen Puccinia striiformis f. sp. tritici, is involved in plant defense suppression and rust pathogenicity[J]. Environmental Microbiology,19(5): 1717-1729. [16] Cui H, Tsuda K, Parker J E.2015. Effector-triggered immunity: From pathogen perception to robust defense[J]. Annual Review of Plant Biology, 66: 487-511. [17] Cuomo C A, Bakkeren G, Khalil H B, et al.2017. Comparative analysis highlights variable genome content of wheat rusts and divergence of the mating loci[J]. G3-Genes Genomes Genetics, 7(2): 361-376. [18] Dodds P N, Lawrence G J, Catanzariti A M, et al.2004. The Melampsora lini AvrL567 avirulence genes are expressed in haustoria and their products are recognized inside plant cells[J]. Plant Cell, 16(3): 755-768. [19] Duplessis S, Cuomo C A, Lin Y C, et al.2011. Obligate biotrophy feature sunraveled by the genomic analysis of rust fungi[J]. Proceedings of the National Academy of Sciences of the USA, 108(22): 9166-9171. [20] Fellers J P, Soltani B M, Bruce M, et al.2013. Conserved loci of leaf and stem rust fungi of wheat share synteny interrupted by lineage-specific influx of repeat elements[J]. BMC Genomics, 14: 60. [21] Feys B J, Parker J E.2000. Interplay of signaling pathways in plant disease resistance[J]. Trends in Genetics, 16(10): 449-455. [22] Gaouar O, Marie Josée Morency, Letanneur C, et al.2016. The 124202 candidate effector of Melampsora laricipopuina interacts with membranes in Nicotiana and Arabidopsis[J]. Canadian Journal of Plant Pathology, 38(2): 197-208. [23] Hu Z, Yan C, Liu P, et al.2013. Crystal structure of NLRC4 reveals its autoinhibition mechanism[J]. Science, 341(6142): 172-175. [24] Huitema E, Vleeshouwers V G, Cakir C, et al.2005. Differences in intensity and specificity of hypersensitive response induction in Nicotiana spp. by INF1, INF2A and INF2B of Phytophthora infestans[J]. Molecular Plant-Microbe Interactions, 18(3): 183-193. [25] Kamoun S, Klucher K M, Coffey M D, et al.1993. A gene encoding a host-specific elicitor protein of Phytophthora parasitica[J]. Molecular Plant-Microbe Interactions, 6(5): 573-581. [26] Kosuge M, Ebina T, Hibi K, et al.2008. ST-segment elevation resolution in lead aVR: A strong predictor of adverse outcomes in patients with Non-ST-Segment elevation acute coronary syndrome[J]. Circulation Journal, 72(7): 1047-1053. [27] Liu C, Pedersen C, Schultz-Larsen T, et al.The stripe rust fungal effector PEC6 suppresses pattern-triggered immunity in a host species-independent manner and interacts with adenosine kinases[J]. New Phytologist. Doi: 10.111/nph.14034 [28] Nemri A, Saunders D G, Anderson C, et al.2014. The genome sequence and effector complement of the flax rust pathogen Melampsora lini[J]. Frontiers in Plant Science, 5: 98. [29] Oh M, Rha G B, Yoon J, et al.2002. RTP1, a rat homologue of adenovims E1A‐associated protein BS69, interacts with DNA topoisomerase Ⅱ[J]. Korean Journal of Biological Sciences, 6(3): 277-282. [30] Oltvai Z N, Milliman C L, Korsmeyer S J, et al.1993. Bcl-2 heterodimerizes in vivo with a conserved homolog, Bax, that acceletates programmed cell death[J]. Cell, 74(4): 609-619. [31] Qi Y P, Tsuda K, Glazebrook J, et al.2011. Physical association of pattern-triggered immunity (PTI) and effector-triggered immunity (ETI) immune receptors in Arabidopsis[J]. Molecular Plant Pathology, 12(7): 702-708. [32] Rowland O, Ludwig A A, Merrick C J, et al.2005. Functional analysis of Avr9/Cf-9 rapidly elicited genes identifies a protein kinase, ACIK1, that is essential for full Cf-9 dependent disease resistance in tomato[J]. The Plant Cell, 17(1): 295-310. [33] Salcedo A, Rutter W, Wang S, et al.2017. Variation in the AvrSr35 gene determines Sr35 resistance against wheat stem rust race Ug99[J]. Science, 358(6370): 1604-1606. [34] Segovia V, Bruce M, Rupp J L S, et al.2016. Two small secreted proteins from Puccinia triticina induce reduction of Ã-glucoronidase transient expression in wheat isolines containing Lr9, Lr24 and Lr26[J]. Canadian Journal of Plant Pathology, 38(1): 91-102. [35] Shan W, Cao M, Leung D, et al.2004. The Avr1b locus of Phytophthora sojae encodes an elicitor and a regulator required for avirulence on soybean plants carrying resistance gene Rps1b[J]. Molecular Plant-Microbe Interactions, 17(4): 394-403. [36] Staskawicz B J, Mudgett M B, Dang J L, et al.2001. Common and contrasting themes of plant and animal diseases[J]. Science, 292(5525): 2285-2289. [37] Takken F L, Goverse A.2012. How to build a pathogen detector: Structural basis of NB-LRR function[J]. Current Opinion in Plant Biology, 15(4): 375-384. [38] Tameling W I, Elzinga S D, Darmin P S, et al.2002. The tomato R gene products I-2 and MI-1 are functional ATP binding proteins with ATPase activity[J]. Plant Cell, 14(11): 2929-2939. [39] Valent B, Khang C H.2010. Recent advances in rice blast effector research[J]. Corrent Opinion in Plant Biology, 13(4): 434-441. [40] vander Merwe M M, Kinnear M, et al.2009. Positive selection in AvrP4 avirulence gene homologues across the genus Melampsora[J]. Proceeding of the Royal Society B:Biological Sciences, 276(1669): 2913-2922. [41] Wang X, Wang X, Feng H, et al.2012. TaMCA4, a novel wheat metacaspase gene functions in programmed cell death induced by the fungal pathogen Puccinia striiformis f. sp. tritici[J]. Molecular Plant-Microbe Interactions, 25(6): 755-764. [42] Wu J Q, Sakthikumar S, Dong C, et al.2017. Comparative genomics integrated with association analysis identifies candidate effector genes corresponding to Lr20 in phenotype-paired Puccinia triticina isolates from Australia[J]. Frontiers in Plant Science, 8: 148. [43] Yang Z M, Xie C J, Sun Q X.2003. Situation of the sources of stripe rust resistance of wheat in the post-CY32 era in China[J]. Acta Agronomica Sinica, 29(2): 161-168. [44] Zhang X, Farah N, Rolston L, et al.2017. Crystal structure of the Melampsora lini effector AvrP reveals insights into a possible nuclear function and recognition by the flax disease resistance protein P[J]. Molecular Plant Pathology, 19(5): 1196-1209. [45] Zheng W, Huang L, Huang J, et al.2013. High genome heterozygosity and endemic genetic recombination in the wheat stripe rust fungus[J]. Nature Communications, 4(1): 2673.