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Polymorphism of PRSS12 Gene and Its Association Analysis with Growth Traits in Sheep (Ovis aries) |
XIONG Jin-Ke, BAO Jing-Jing, BI Ya-Zhen, HU Wen-Ping, ZHANG Li* |
Institute of Animal Science, Chinese Academy of Agricultural Sciences/State Key Laboratory of Animal Biotech Breeding, Beijing 100193, China |
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Abstract The identification of sheep (Ovis aries) molecular markers related to growth traits is of great significance to improve the economic benefits of sheep industry. Serine protease 12 (PRSS12), also known as neurotrypsin, is specifically expressed in the central nervous system and is associated with a variety of neurological functions. In order to explore the polymorphism of PRSS12 gene and its correlation with the growth traits of Hu sheep and Ujumqin sheep, this study used gene chip technology to genotype 1 008 Hu sheep and 336 Ujimqin sheep, and conducted association analysis with growth traits to identify molecular markers related to sheep growth and development. The results of genotyping showed that two SNP loci were detected in Ujimqin sheep population, in which rs402399470G>A presented low polymorphism, while rs418440631G>A showed moderate polymorphism. And only one SNP locus, namely rs418440631G>A, was detected in Hu sheep population, which showed low polymorphism. The results of association analysis with growth traits showed that rs402399470G>A locus was significantly correlated with 4-month-old body weight and 6-month-old chest width (P<0.05), while rs418440631G>A locus was significantly correlated with 4-month-old chest circumference, tube circumference and 6-month-old chest circumference of Ujimqin sheep (P<0.05). The rs418440631G>A locus was extremely significantly correlated with birth weight and 5-month chest circumference of Hu sheep (P<0.01), and significantly correlated with 3-month tube circumference, 5-month body length and chest width of Hu sheep (P<0.05). The correlation coefficient between body weight and body size of Ujimqin sheep and Hu sheep was calculated by R language corrplot package, showing a significant positive correlation between weight and body size (P<0.05), with the highest correlation coefficient between weight and chest circumference. There was a significant positive correlation between body weight and body size, and the correlation coefficient between weight and chest circumference was the highest. In conclusion, the rs402399470G>A and rs418440631G>A loci of PRSS12 gene could be used as potential molecular genetic markers for the growth traits of sheep. This study provides a reference basis for mutton sheep breeding and selection.
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Received: 04 September 2023
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Corresponding Authors:
* zhangli07@caas.cn
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[1] 毕亚珍, 尚明玉, 胡文萍, 等. 2023. 绵羊生长性状间的相关和回归分析及TRHDE基因多态性与生长性状的关联分析[J]. 畜牧兽医学报, 54(04): 1415-1428. (Bi Y Z, Shang M Y, Hu W P, et al.2023. Correlation and regression analysis among growth traits and association analysis between TRHDE gene polymorphism and growth traits in sheep[J]. Journal of Animal Husbandry and Veterinary Medicine, 54(04): 1415-1428.) [2] 陈玲, 李振龙, 刘桐序, 等. 2023. 不同月龄湖羊体重与体尺的多元回归分析[J]. 中国畜牧杂志, 59(02): 80-84. (Chen L, Li Z L, Liu T X, et al.2023. Multiple regression analysis of body weight and body size of Hu sheep of different months[J]. Chinese Journal of Animal Husbandry, 59(02): 80-84.) [3] 冯勉, 尚明玉, 毕亚珍, 等. 2022. 绵羊FUT8基因多态性及其与生长性状的关联分析[J]. 中国畜牧兽医, 49(10): 3838-3845. (Feng M, Shang M Y, Bi Y Z, et al.2022. Polymorphism of FUT8 gene and its association with growth traits in sheep[J]. Chinese Animal Husbandry and Veterinary Medicine, 49(10): 3838-3845.) [4] 高清, 胡丽蓉, 张海亮, 等. 2023. 荷斯坦牛血浆催乳素浓度遗传参数估计及其与PRL、PRLR和TRH基因关联分析[J]. 中国农业大学学报, 28(02): 114-125. (Gao Q Hu L R, Zhang H L, et al.2023. Estimation of genetic parameters of plasma prolactin concentration and its association with PRL, PRLR and TRH genes in Holstein cattle[J]. Journal of China Agricultural University, 28(02): 114-125.) [5] 郭强. 2019. 杜湖杂种绵羊肉用性能测定及生长性状遗传参数估计[D]. 山西农业大学, 导师: 刘文忠, pp. 40-50. (Guo Q.2019. Determination of meat performance and estimation of genetic parameters of growth traits in Duhu hybrid sheep[D]. Shanxi Agricultural University, Supervisor: Liu W Z, pp. 40-50.) [6] 李锋超. 2010. PRSS12基因多态性与秦巴山区精神发育迟滞的关联分析[D]. 硕士学位论文, 西北大学, 导师: 邢连喜, pp 38-45. (Li F C.2010. Association analysis between PRSS12 gene polymorphism and mental retardation in Qinba Mountain area[D]. Thesis for M.S., Northwest University, Supervisor: Xing L C, pp. 38-45.) [7] 李建江, 宋锐, 牛葕洲, 等. 2015. 我国畜禽遗传资源保护利用现状分析[J]. 西北民族大学学报(自然科学版), 36(03): 16-21. (Li J J, Song R, Niu M Z, et al.2015. Analysis of the present situation of protection and utilization of livestock and poultry genetic resources in China[J]. Journal of Northwest University for Nationalities (Natural Science Edition), 36(03): 16-21.) [8] 李群. 1997. 湖羊的来源及历史再探[J]. 中国农史, (02): 90-94. (Li Q. 1997. Re-exploration of the origin and history of Hu sheep[J]. Chinese Agricultural History, (02): 90-94.) [9] 李昕俞, 乔程, 李桢, 等. 2019. 杜泊羊与湖羊杂交羔羊生长发育规律研究[J]. 黑龙江畜牧兽医, (02): 52-55. (Li X Y, Qiao C, Li Z, et al. 2019. Study on the growth and development of hybrid lambs between du Bo sheep and Hu sheep[J]. Heilongjiang Animal Husbandry and Veterinary Medicine, (02): 52-55.) [10] 刘继强, 郝晓东, 武丽娜, 等. 2022. 全基因组SNP分型技术在畜禽遗传育种研究中的应用[J]. 畜牧兽医学报, 53(12): 4123-4137. (Liu J Q, Hao X D, Wu L N, et al.2022. Application of whole genome SNP typing technique in livestock and poultry genetics and breeding[J]. Journal of Animal Husbandry and Veterinary Medicine, 53(12): 4123-4137.) [11] 刘泽林, 杨娟, 许铭洙, 等. 2023. 山羊ZBP1基因多态性及与产羔性能的关联分析[J]. 中国畜牧兽医, 50(01): 161-173. (Liu Z L, Yang J, Xu M Z, et al.2023. Polymorphism of ZBP1 gene and its association with lambing performance in goats[J]. Chinese Animal Husbandry and Veterinary Medicine, 50(01): 161-173.) [12] 刘震乙, 文浴兰, 沙里. 1982. 乌珠穆沁羊品种誌[J]. 内蒙古农牧学院学报, (01): 1-6. (Liu Z Y, Wen Y L, Sha L. 1982. Ujumqin sheep breed[J]. Journal of Inner Mongolia Agriculture and Animal Husbandry College, (01): 1-6.) [13] 强浩, 梁鹏, 孟科, 等. 2022. 绵羊IGF1R基因多态性及其与生长性状的关联分析[J]. 中国畜牧兽医, 49(05): 1765-1785. (Qiang H, Liang P, Meng K, et al.2022. Polymorphism of IGF1R gene and its association with growth traits in sheep[J]. Chinese Animal Husbandry and Veterinary Medicine, 49(05): 1765-1785.) [14] 乔国艳. 2020. 高山美利奴羊重要经济性状遗传参数估计和遗传评定[D]. 硕士学位论文, 中国农业科学院, 导师: 杨博辉, pp. 31-40. (Qiao G Y.2020. Genetic parameter estimation and genetic evaluation of important economic traits in alpine Merino sheep[D]. Thesis for M.S., Chinese Academy of Agricultural Sciences, Supervisor: Yang B H, pp. 31-40.) [15] 唐军, 黄润媚, 蔡柏林, 等. 2019. “清远黑鬃鹅”早期生长与体尺性状发育规律的研究[J]. 中国畜牧杂志, 55(07): 71-75. (Tang J, Huang R M, Cai B L, et al.2019. Study on the early growth and development of body size traits of Qingyuan black maned goose[J]. Chinese Journal of Animal Husbandry, 55(07): 71-75.) [16] 徐怀亮. 2010. 7个灵长类物种PRSS12基因编码区序列测定与进化分析[J]. 东北林业大学学报, 38(04): 85-88. (Xu H L.2010. Sequence determination and evolutionary analysis of PRSS12 gene coding region in 7 primate species[J]. Journal of Northeast Forestry University, 38(04): 85-88.) [17] 张晋华. 2021. 乌珠穆沁羊生长性状基因遗传效应分析与育种应用[D]. 硕士学位论文, 中国农业科学院, 导师: 张莉, pp. 48-50. (Zhang J H.2021. Genetic effect analysis and breeding application of growth traits in Ujumqin sheep[D]. Thesis for M.S., Chinese Academy of Agricultural Sciences, Supervisor: Zhang L, pp. 48-50.) [18] 张梅, 李涛, 刘宜勇, 等. 2021. 哈萨克羊群体生长曲线拟合及回归分析[J]. 中国畜牧杂志, 57(06): 160-163. (Zhang M, Li T, Liu Y Y, et al.2021. Population growth curve fitting and regression analysis of Kazakh sheep[J]. Chinese Journal of Animal Husbandry, 57(06): 160-163.) [19] 张清纯. 2023. 烟台黑猪群体遗传结构和PRRSV及PCV2抗病基因多态性分析[D]. 硕士学位论文, 山东农业大学, 导师: 姜运良, pp. 42-45. (Zhang Q C.2023. Analysis of population genetic structure and polymorphism of PRRSV and PCV2 resistance genes in Yantai Black pig[D]. Thesis for M.S., Shandong Agricultural University, Supervisor: Jiang Y L, pp. 42-45.) [20] 张庆泽, 李清春, 和军飞, 等. 2023. 大白猪FST基因多态性与生长和繁殖性状的关联分析[J]. 中国畜牧杂志, 59(08): 185-190. (Zhang Q Z, Li Q C, He J F, et al.2023. Association analysis of FST gene polymorphism with growth and reproductive traits in large white pigs[J]. Chinese Journal of Animal Husbandry, 59(08): 185-190.) [21] 朱峰勇. 2022. 大蒲莲猪、汶鑫黑猪群体遗传结构及抗病基因多态性分析[D]. 硕士学位论文, 山东农业大学, 导师: 姜运良, pp. 45-47. (Zhu F Y.2022. Analysis of population genetic structure and disease resistance gene polymorphism of Dapulian pig and Wenxin black pig[D]. Thesis for M.S., Shandong Agricultural University, Supervisor: Jiang Y L, pp. 45-47.) [22] Bolliger M F, Zurlinden A, Luscher D, et al.2010. Specific proteolytic cleavage of agrin regulates maturation of the neuromuscular junction[J]. Journal of Cell Science, 123(Pt22): 3944-3955. [23] Butikofer L, Zurlinden A, Bolliger M F, et al.2011. Destabilization of the neuromuscular junction by proteolytic cleavage of agrin results in precocious sarcopenia[J]. FASEB Journal, 25(12): 4378-4393. [24] Chen C H, Li B J, Gu X H, et al.2019. Marker-assisted selection of YY supermales from a genetically improved farmed tilapia-derived strain[J]. Zoological Research, 40(2): 108-112. [25] Gschwend T P, Krueger S R, Kozlov S V, et al.1997. Neurotrypsin, a novel multidomain serine protease expressed in the nervous system[J]. Molecular and Cellular Neuroscience, 9(3): 207-219. [26] Iijima N, Tanaka M, Mitsui S, et al.1999. Expression of a serine protease (motopsin PRSS12) mRNA in the mouse brain: In situ hybridization histochemical study[J]. Brain Research. Molecular Brain Research, 66(1-2): 141-149. [27] Mitsui S, Osako Y, Yokoi F, et al.2009. A mental retardation gene, motopsin/neurotrypsin/prss12, modulates hippocampal function and social interaction[J]. European Journal of Neuroscience, 30(12): 2368-2378. [28] Mitsui S, Yamaguchi N, Osako Y, et al.2007. Enzymatic properties and localization of motopsin (PRSS12), a protease whose absence causes mental retardation[J]. Brain Research, 1136(1): 1-12. [29] Pasandideh M, Rahimi-Mianji G, Gholizadeh M.2018. A genome scan for quantitative trait loci affecting average daily gain and Kleiber ratio in Baluchi sheep[J]. Journal of Genetics, 97(2): 493-503. [30] Pratt J, Whitton L, Ryan A, et al.2023. Genes encoding agrin (AGRN) and neurotrypsin (PRSS12) are associated with muscle mass, strength and plasma C-terminal agrin fragment concentration[J]. Geroscience, 45(3): 1289-1302. [31] Purcell S, Neale B, Todd-Brown K, et al.2007. PLINK: A tool set for whole-genome association and population-based linkage analyses[J]. American Journal of Human Genetics, 81(3): 559-575. [32] Ramakers G J.2002. Rho proteins, mental retardation and the cellular basis of cognition[J]. Trends in Neurosciences, 25(4): 191-199. [33] Tamura K, Stecher G, Kumar S.2021. MEGA11: Molecular evolutionary genetics analysis version 11[J]. Molecular Biology and Evolution, 38(7): 3022-3027. [34] Whiley P, O'Donnell L, Moody S C, et al.2020. Activin A determines steroid levels and composition in the fetal testis[J]. Endocrinology, 161(7): bqaa058. [35] Wolfer D P, Lang R, Cinelli P, et al.2001. Multiple roles of neurotrypsin in tissue morphogenesis and nervous system development suggested by the mRNA expression pattern[J]. Molecular and Cellular Neuroscience, 18(4): 407-433. |
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