|
|
Construction and Efficiency Evaluation of the Super-competence of Wild- type Bacillus subtilis |
LIU Gong-Wei1, WU Jing-Yun1, JIN Miao-Han1, WANG Xiao-Yu1,2, YANG Yu-Xin1*, CHEN Yu-Lin1* |
1 College of Animal Science and Technology, Northwest A & F University, Yangling 712100, China;
2 Qinling Giant Panda Breeding Research Center, Shaanxi Academy of Forestry Sciences, Zhouzhi 710402, China |
|
|
Abstract Bacillus subtilis is a bacterial species wildly used in food industry, feed fermentation and bioengineering. This is owing to its safety and excellent ability of heterologous protein expression. In particular, the expansion of studies proved the use of B. subtilis 168 as the host strain for genetic engineering. However, the transformation efficiency of B. subtilis from the natural environment was extremely low, which greatly limited the application and modification of genetic engineering. In this study, wild-type B. subtilis C6 (BS-C6) was selected as the original bacteria for genetic engineering, which was isolated from the intestinal tract of Reticulitermes labralis and stored in our laboratory. The engineering bacteria B. subtilis C6-comk (C6- comk) and B. subtilis C6-comks (C6-comks) were constructed via double-crossover homologous recombination. Competence transcription factor (comK) is a key regulatory protein that affects genetic competence and DNA uptake in B. subtilis. The C6-comk strain was obtained by replacing the original promoter of the comK gene with xylose-inducible promoter (PxylA). On the other hand, the comK gene was amplified from the genome of B. subtilis 168, and then fused with the xylose-inducible promoter (PxylA). The overlap product was inserted into the extracellular serine protease (epr) site of wild-type B. subtilis C6 by using the homologous recombination approach. The super-competent C6-comks strain was successfully obtained. The results showed that the C6-comk strain transformed with plasmids and PCR products could not obtain positive clones, indicated that the method needs further improvement. Fortunately, the desirable phenotypes of C6-comks strain were observed. The results showed that the plasmid transformation efficiency of C6-comks strain was (4117±363) CFU/µg, the efficiency was improved by about 8 folds (P<0.01) compared to BS-C6 (wild type). Notably, the transformation efficiency of PCR products was (442±52) CFU/µg, transcending BS- C6 by about 73.7 folds (P<0.01). Furthermore, the qRT-PCR results showed that the expression of key genes for competence formation were significantly increased compared to BS-C6. The comK, comGB, comGF, comFA and comFC was improved 77, 1 654, 1 180, 885 and 108 folds (P<0.01), respectively. In contrast, the gene expression levels of flagellar basal-body rod protein (flgB), xylose isomerase (xylA) and xylulokinase (xylB) were only 64% (P<0.05), 12% (P<0.01) and 11% (P<0.01) compared to BS-C6. The gene expression levels of C6-comks strain and C6-comk strain were also compared. The results showed that the gene expression levels of comK, comGB, comGF, comFA and comFC were significantly increased by 1.5, 451, 403, 797 and 100 folds (P<0.01) in C6-comks, respectively; while xylA and xylB were significantly reduced by 5.2 and 6.6 folds (P<0.01). There was no treatment effect on flgB gene expression between C6-comks and C6- comk strains (P>0.05). Taken together, this study successfully generated super-competence B. subtilis from the natural environment and analyzed the reasons for the difference of transformation efficiency, which provided a valuable reference for genetic engineering application of wild-type B. subtilis as a host cell.
|
Received: 26 October 2021
|
|
Corresponding Authors:
*yangyuxin2002@126.com; chenyulin@nwafu.edu.cn
|
|
|
|
[1] 李瑞芳, 薛雯雯, 黄亮, 等 . 2011. 枯草芽孢杆菌感受态细胞的制备及质粒转化方法研究[J]. 生物技术通报, 35(05):227-230.
(Li R F, Xve W W, Huang L, et al.2011. Competent preparation and plasmid transformation of Bacillus subtilis[J]. Biotechnology Bulletin, 35(05): 227-230.)
[2] 李信志, 卢争辉, 周玉玲, 等 . 2017. 枯草芽孢杆菌 SCK6 超级感受态的制备和转化条件优化[J]. 生物工程学报,33(4): 692-698.
(Li X Z, Lu Z H, Zhou Y L, et al.2017. Preparation and transformation optimization for super‐ competent B. subtilis SCK6 cells[J]. Chinese Journal of Biotechnology, 33(4): 692-698.)
[3] 卢争辉, 周玉玲, 张晓舟, 等 . 2015. 感受态还是芽胞?细胞命运决定的遗传调控网络[J]. 生物工程学报 , 31(011):1543-1552.
(Lu Z H, Zhou Y L, Zhang X Z, et al.2015. Sporulation or competence development? A genetic reg‐ ulatory network model of cell-fate determination in Ba- cillus subtilis[J]. Chinese Journal of Biotechnology, 31(011): 1543-1552.)
[4] 闫新 .2008. 枯草杆菌基因一步敲除法的建立和 MPH 在芽孢杆菌中表达的研究[D]. 博士学位论文, 南京农业大学, 导师: 李顺鹏, pp. 101-110.
(Yan X.2008. Establishment of one-step gene knockout method in Bacillus sub- tilis and studies on MPH expression in Bacillus[D]. The‐ sis for Ph D, Nanjing Agriculture University, Supervi‐ sor: Li S P. pp. 101-110.)
[5] 张晓舟 .2006. 枯草杆菌新型表达系统和遗传操作体系的建立及应用[D]. 博士学位论文, 南京农业大学, 导师: 李顺鹏 . pp. 1-21.
(Zhang X Z.2006. Establishment and application of the new expression and genetic manipula‐ tion system in Bacillus subtilis[D]. Thesis for Ph. D, Nan‐ jing Agriculture University, Supervisor: Li S P, pp. 1-21.
[6] Chilton S S, Falbel T G, Hromada S, et al.2017. A conserved metal binding motif in the Bacillus subtilis competence protein ComFA enhances transformation[J]. Journal of Bacteriology, 199(15): e00272-17.
[7] Chung Y S, Breidt F, Dubnau D.1998. Cell surface localiza‐ tion and processing of the ComG proteins, required for DNA binding during transformation of Bacillus subtilis [J]. Molecular Microbiology, 29(3): 905-913.
[8] Chung Y S, Dubnau D.1998. All seven comG open reading frames are required for DNA binding during transforma‐ tion of competent Bacillus subtilis[J]. Journal of Bacteri‐ ology, 180(1): 41-45.
[9] Gu Y, Xu X, Wu Y, et al.2018. Advances and prospects of Ba- cillus subtilis cellular factories: From rational design to industrial applications[J]. Metabolic Engineering, 50:109-121.
[10] Kramer N, Hahn J, Dubnau D.2007. Multiple interactions among the competence proteins of Bacillus subtilis[J]. Molecular Microbiology, 65(2): 454-464.
[11] Phan T T, Nguyen H D, Schumann W.2012. Development of a strong intracellular expression system for Bacillus sub- tilis by optimizing promoter elements[J]. Journal of Bio‐ technology, 157(1): 167-172.
[12] Schmittgen T D, Livak K J.2008. Analyzing real-time PCR data by the comparative C(T) method[J]. Nature Proto‐ col, 3(6): 1101-1108.
[13] Smits W K, Eschevins C C, Susanna K A, et al.2005. Stripping Bacillus: ComK auto-stimulation is responsible for the bistable response in competence development[J]. Molecular Microbiology, 56(3): 604-614.
[14] Spizizen J.1958. Transformation of biochemically deficient strains of Bacillus subtilis by deoxyribonucleate[J]. Proceedings of the National Academy of Sciences of the USA, 44(10): 1072-1078.
[15] van Sinderen D, Luttinger A, Kong L, et al.1995. comK en‐ codes the competence transcription factor, the key regulatory protein for competence development in Bacillus subtilis[J]. Molecular Microbiology, 15(3): 455-462.
[16] van Sinderen D, Venema G.1994. ComK acts as an autoregu‐ latory control switch in the signal transduction route to competence in Bacillus subtilis[J]. Journal of Bacteriology, 176(18): 5762-5770.
[17] Wu Y, Chen T, Liu Y, et al.2018. CRISPRi allows optimal temporal control of N-acetylglucosamine bioproduction by a dynamic coordination of glucose and xylose metab‐ olism in Bacillus subtilis[J]. Metabolic Engineering, 49:232-241.
[18] Wu Y, Liu Y, Lv X, et al.2020. CAMERS-B: CRISPR/Cpf1 assisted multiple-genes editing and regulation system for Bacillus subtilis[J]. Biotechnology and Bioengineer‐ ing, 117(6): 1817-1825.
[19] Yin X, Zhang G, Zhou J, et al.2021. Combinatorial engineering for efficient production of protein-glutaminase in Bacillus subtilis[J]. Enzyme and Microbial Technology,150: 109863.
[20] Zhang Q, Wu Y, Gong M, et al.2021. Production of proteins and commodity chemicals using engineered Bacillus sub- tilis platform strain[J]. Essays in Biochemistry, 65(2):173-185.
[21] Zhang X, Zhang Y H P.2011. Simple, fast and high-efficiency transformation system for directed evolution of cellulase in Bacillus subtilis[J]. Microbial Biotechnology, 4(1): 98-105.
[22] Zhu B, Stulke J.2018. SubtiWiki in 2018: From genes and proteins to functional network annotation of the model organism Bacillus subtilis[J]. Nucleic Acids Research, 46(D1): D743-D748. |
|
|
|