|
|
Functional Prediction of circ_MBNL1 in Duck (Anas platyrhynchos domesticus) Adipocyte Differentiation |
ZHANG Ao1, WANG Lai-Di1, YANG Ting1, JIANG Yong1, WANG Zhi-Xiu1, CHEN Guo-Hong1,2, BAI Hao2,*, CHANG Guo-Bin1,2,* |
1 Key Laboratory of Animal Genetic Breeding and Molecular Design in Jiangsu Province/College of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China; 2 Joint International Research Laboratory of Agriculture and Agri-Product Safety, Ministry of Education/Institute of Agricultural Science and Technology Development, Yangzhou University, Yangzhou 225009, China |
|
|
Abstract Circular RNAs (circRNAs), a novel endogenous non-coding RNA expressed in various tissues. In this paper, circ_MBNL1 encoded by MBNL1 (musblind-like 1) gene was selected for identification and functional analyses based on the results of circRNA sequencing during the differentiation of duck (Anas platyrhynchos domesticus) embryo primary cells. The conjugated sequence was obtained by PCR amplification and pyrosequencing. And the nucleoplasmic separation assay revealed that duck circ_MBNL1 was mainly localized in the nucleus. Tissue expression profiles suggested that circ_MBNL1 was mainly expressed in duck spleen, adipose and lung tissues. The bioinformatics analysis results indicated that circ_MBNL1 and the predicted target genes were mainly enriched in adipocytokine signaling pathway, FoxO signaling and other pathways, which was hypothesized that circ_MBNL1 might be involved in regulating the differentiation process of duck adipocytes. This study provides a theoretical basis for an in-depth investigation of the regulatory role of circ_MBNL1 in the differentiation process of duck adipocytes.
|
Received: 15 December 2022
|
|
Corresponding Authors:
* bchang@yzu.edu.cn; bhowen1027@yzu.edu.cn
|
|
|
|
[1] 贺丽, 杨平, 田良. 2022. miR-455-5p对肾细胞癌增殖凋亡及侵袭的影响及机制研究[J]. 重庆医学, 51(16): 2723-2729. (He L,Yang P,Tian L.2022. Study on effect and mechanism of miR-455-5p on proliferation, apoptosis and invasion of renal cell carcinoma[J]. Chongqing Medicine, 51(16): 2723-2729.) [2] 侯晓旭, 李村院, 蔡晓桃, 等. 2020. 牛病毒性腹泻病毒复制相关宿主细胞环状RNA的筛选[J]. 动物医学进展, 41(9): 30-35. (Hou X X,Li C Y,Cai X T, et al.2020. Screening of host cell circrna related to replication of Bovine viral diarrhea virus[J].Progress in Veterinary Medicine, 41(9): 30-35.) [3] 胡晓丹, 王来娣, 杨婷, 等. 2021. 鸭脂肪细胞中circ-FBLN2鉴定与功能预测[J]. 浙江农业学报, 33(4): 602-609. (Hu X D,Wang L D,Yang T, et al.2021. Validation and function prediction of circ-FBLN2 in duck adipocytes[J]. Acta Agriculturrae Zhejianggensis, 33(4): 602-609.) [4] 黄娅丽. 2021. 香猪卵巢circRNA的筛选及鉴定[D]. 硕士学位论文, 贵州大学, 导师: 王嘉福, pp.2-5. (Huang Y L.2021. Screening and identification of porcine ovary circRNA[D]. Thesis for M.S., Guizhou University, Supervisor: Wang J F, pp. 2-5) [5] 李家旋, 宋倩倩, 徐鸣鸿等. 2022. FoxO1基因对鸭脂肪沉积的作用及机制初探[J]. 中国家禽, 44(07): 114-118. (Li J X, Song Q Q, XU M H, et al.2022. Preliminary study on effect and mechanism of FoxO1 gene on fat deposition in duck[J]. China Poultry, 4(07): 114-118.) [6] 刘锐, 李江凌, 杜华锐, 等. 2022. 鸡胸腺组织中免疫相关circRNA鉴定[J]. 中国畜牧兽医, 49(06): 2022-2032. (Liu R, Li J L, Du H R, et al.2022. Identification of immune-related circRNA of thymus in chickens[J]. China Animal Husbandry & Veterinary Medicine, 49(06): 2022-2032.) [7] 欧阳宏佳. 2017. 环状RNA对鸡胚胎骨骼肌发育的影响[D]. 博士学位论文, 华南农业大学, 导师: 聂庆华,pp.51-71. (OuYang H J.2017. The effect of circular RNAs on chicken embryonic skeletal muscle development[D]. Thesis for Ph.D., South China Agricultural University, Supervisor: Nie Q H, pp. 51-71.) [8] 仇玲玲. 2020. 鸡circRNA_2420--Bcl11b介导细胞凋亡调控ALV-J感染的作用机制[D]. 博士学位论文, 扬州大学, 导师: 常国斌, pp. 63-92. (Qiu L L.2020. Mechanism of circRNA_2420-Bcl11b-mediated apoptosis in regulating ALV-J infection in chickens[D]. Thesis for Ph. D., Yangzhou University, Supervisor: Chang G B,pp. 63-92.) [9] 邵冰豪. 2022. 胰岛素诱导的不同品种鸡骨骼肌中circRNAs的鉴定与功能分析[D]. 硕士学位论文, 河南农业大学, 导师: 黄艳群, pp.58-64. (Shao B H.2022. Identification and functional analysis of insulin-induced circrnas in skeletal muscle of different chicken breeds[D]. Thesis for M.S., Henan Agricultural University, Supervisor: Huang Y Q, pp. 58-64.) [10] 邵静. 2020. miR-1271、miR-381、miR-17-3p和miR-22-3p对延边黄牛前体脂肪细胞分化的影响[D]. 硕士学位论文, 延边大学, 导师: 夏广军, pp.51-58. (Shao J.2020,Effects of Mir-1271,Mir-381,Mir-17-3P and Mir-22-3p on differentiation of Yanbian yellow cattle precursor adipocytes[D]. Thesis for M.S., Yanbian University, Supervisor: Xia G J, pp. 51-58.) [11] 田慧月, 王志秀, 周婷婷等. 非编码RNAs在家禽脂肪沉积中的作用研究进展[J]. 中国家禽, 2022, 44(03): 85-89. (Tian H Y, Wang Z X, Zhou T T, et al.2022. Research progress on the role of non-coding RNAs in poultry fat deposition[J]. China Poultry, 44(03): 85-89.) [12] 王莎莎. 2018. 整合组学分析鉴定鸭脂肪形成与沉积性状候选功能基因[D]. 博士学位论文, 扬州大学, 导师: 常国斌, pp. 24-61. (WANG S S.2018. Integrated analysis to identify candidate functional genes for fat formation and deposition in ducks[D]. Thesis for Ph. D., Yangzhou University, Supervisor: Chang G B, pp. 24-61.) [13] 王卫振, 邓占钊, 辛国省, 等. 2021. 环状RNA的生物学功能及其在家禽中的研究进展[J]. 畜牧兽医学报, 52(07): 1778-1788. (Wang W Z,Deng Z L,Xin G S, et al.2021.The biological function of circular RNA and its research progress in poultry[J]. Acta Veterinaria et Zootechnica Sinica, 52(7): 1778-1788.) [14] 吴敏. 2017. microRNA-455-5p靶向IGF1R调控猪脂肪细胞增殖分化机理的研究[D]. 硕士学位论文, 广西大学, 导师: 兰干球, pp.14. (Wu M.2017. microRNA-455-5p regulating adipose cell proliferation and differentiation by targeting IGF1R gene in pig[D]. Thesis for M.S.,Guangxi University, Supervisor: Lan G Q, pp. 14.) [15] 杨婷, 王来娣, 胡晓丹, 等. 2022. 鸡circ_PLXNA1鉴定及其在脂肪细胞分化中的功能预测[J]. 东北农业大学学报,53(3): 61-69. (Yang T, Wang L D, Hu X D, et al.2022. Identification and function prediction of circ_PLXNA1 in chicken adipocyte differentiation[J]. Journal of Northeast Agricultural University, 53(3): 61-69.) [16] 曾蒙颖, 雷鸣, 易碧云, 等. 2021. miR-455-5p在恶性肿瘤中作用机制的研究进展[J]. 中国现代医药杂志, 23(09): 95-100. (Zeng M Y, Lei M, Yi B Y, et al.Research progress in the mechanism of miR-455-5p in malignant tumors[J]. Modern Medicine Journal of China, 23(09): 95-100.) [17] 祝超. 2022. MBNL1调控MLL-r白血病的分子机制研究[D]. 硕士学位论文, 上海师范大学, 导师: 章骏, pp. 42-50. (Zhu C.2022. Study on the molecular mechanism of MBNL1 regulating MLL-r leukemia[D]. Thesis for M.S., Shanghai Normal University,Supervisor: Zhang J, pp. 42-50.) [18] 朱楠, 刘炳亚, 俞焙秦. 2022. 肌盲样蛋白1在恶性肿瘤中作用的研究进展[J]. 上海交通大学学报(医学版), 42(10): 1474-1481. (Zu L, Liu B Y, Yu B Q.Advances in the role of muscle blind-like protein 1 in malignant tumors[J]. Journal of Shanghai Jiao Tong University (Medical Science), 42(10): 1474-1481.) [19] Chen X C,Peng B, Jiang H M, et al.2022. Salvianolic acid B alleviates oxidative stress in non-alcoholic fatty liver disease by mediating the SIRT3/FOXO1 signaling pathway (English)[J]. Journal of Chinese Pharmaceutical Sciences, 31(09): 698-710.) [20] Hung C S, Lin J C.2019.Alternatively spliced MBNL1 isoforms exhibit differential influence on enhancing brown adipogenesis[J]. Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms, 1863: 1994437. [21] Jin X, Gao J, Zheng R,et al.2020. Antagonizing circRNA_002581-miR-122-CPEB1 axis alleviates NASH through restoring PTEN-AMPK-mTOR pathway regulated autophagy[J]. Cell Death & Disease, 11(2): 123. [22] Li J, Qi J, Tang Y, et al.2021.A nanodrug system overexpressed circRNA_0001805 alleviates nonalcoholic fatty liver disease via miR-106a-5p/miR-320a and ABCA1/CPT1 axis[J]. Journal of Nanobiotechnology, 19(1): 363-379. [23] Monika G, Cyril S, Anne-Sophie A, et al.2020. Genetic ablation of MiR-22 fosters diet-induced obesity and NAFLD development[J]. Journal of Personalized Medicine, 10(4): 170-186. [24] Qiu L L, Chang G B, Bi Y L,et al.2018.Circular RNA and mRNA profiling reveal competing endogenous RNA networks during Avian leukosis virus, subgroup J-induced tumorigenesis in chickens[J]. PLOS ONE, 13(10): e0204931. [25] Wu Y, Xiao H, Pi J, et al.2020. The circular RNA aplacirc_13267 upregulates duck granulosa cell apoptosis by the apla-miR-1-13/THBS1 signaling pathway[J]. Journal of Cellular Physiology, 235(7-8): 5750-5763. [26] Zhang X, Yan Y, Lei X, et al.2017.Circular RNA alterations are involved in resistance to Avian leukosis virus subgroup-J-induced tumor formation in chickens[J]. Oncotarget, 8(21): 34961-34970. [27] Zhang M, Han Y, Zhai Y, et al.2020a. Integrative analysis ofcircRNAs, miRNAs, and mRNAs profiles to reveal ceRNAs networks in chicken intramuscular and abdominal adipogenesis[J]. BMC Genomics, 21: 594. [28] Zhang Y F, Guo X, Pei J, et al.2020b. CircRNA expression profile during yak adipocyte differentiation and screen potential circRNAs for adipocyte differentiation[J]. Genes, 11(4): 414-426. |
|
|
|