Mutagenesis of Non-conservative Sites in Loop Region Near Active Center Improves Catalytic Activity and Thermostability of Endoglucanase
ZHANG Chao1,2,*, JIA He-Xue1,3, WANG Ting-Ting1, WANG Qian1, GENG Ming-Yu1, ZONG Jin-Nan1, SUN Jin-Xu1,2
1 College of Life Science, Hengshui University, Hengshui 053000, China; 2 Hebei Technology Innovation Centre of Fruit and Vegetable Fermentation, Hengshui 053000, China; 3 Center for Wetland Conservation and Research, Hengshui University, Hengshui 053000, China
Abstract:Cellulases are key catalysts for the efficient utilization of cellulose resources, but their insufficient catalytic efficiency and thermostability have seriously restricted their widespread application. In this study, endoglucanase EG-20SJ from the glycoside hydrolase family 5 (GH5), derived from Bacillus velezensis, was used as the research object. First, non-conservative sites in the loop region near the active center were screened through homology modeling and conservation analysis. Then, combined with alanine scanning and site-saturation mutagenesis, mutants were constructed, and their enzymatic properties were analyzed. Results showed that among the saturation mutants at the Asp99 and Ser264 sites, the single mutants D99R, S264R, and the double mutant D99R/S264R exhibited significantly improved activity. Specifically, the double mutant had an enzyme activity of 544.2 U/mg, which was 2.51 times that of the wild-type (217.1 U/mg). Regarding enzymatic properties, the optimal reaction temperature of the double mutant increased by 10 ℃ (reaching 60 ℃), and its residual activity after incubation at 70 ℃ for 1 h reached 61.7%. Kinetic analysis revealed a 44.0% reduction in michaelis constant (Km) and a 1.2-fold higher catalytic constant (kcat)/Km, indicating significant improvements in substrate affinity and catalytic efficiency. Molecular docking results confirmed that Arg99 and Arg264 in the double mutant enhanced substrate binding through additional hydrogen bonds and stabilized the conformation of the loop region. This study revealed the regulatory mechanism of non-conservative loop sites on enzyme function, providing a theoretical basis for the molecular modification and broad application of GH5 family enzymes.
张超, 贾贺雪, 王婷婷, 王倩, 耿明瑜, 宗锦楠, 孙金旭. 近活性中心loop区非保守位点突变提高内切葡聚糖酶催化活性和热稳定性[J]. 农业生物技术学报, 2026, 34(7): 1530-1539.
ZHANG Chao, JIA He-Xue, WANG Ting-Ting, WANG Qian, GENG Ming-Yu, ZONG Jin-Nan, SUN Jin-Xu. Mutagenesis of Non-conservative Sites in Loop Region Near Active Center Improves Catalytic Activity and Thermostability of Endoglucanase. 农业生物技术学报, 2026, 34(7): 1530-1539.
[1] 刘俊杰, 严晓斌, 张美怡, 等. 2025. 中国农作物秸秆资源产量分布及利用分析[J]. 农业资源与环境学报, 42(3): 751-760. (Liu J J, Yan X B, Zhang M Y, et al.2025. Analysis of the production and utilization of straw resources in China[J]. Journal of Agricultural Resources and Environment, 42(3): 751-760.) [2] 乔慧艳, 石雅丽, 韩昊健. 2025. 微生物来源纤维素酶的研究进展[J]. 中国农业科技导报, 27(5): 21-38. (Qiao H Y, Shi Y L, Han H J.2025. Research progress of cellulase derived from microorganisms[J].Journal of Agricultural Science and Technology, 27(5): 21-38.) [3] 田庚, 高伟强, 陈晓波, 等. 2021. 地衣芽孢杆菌KD-1β-甘露聚糖酶定点突变提高酶活性及稳定性[J]. 生物技术通报, 37(10): 100-109. (Tian G, Gao W Q, Chen X B, et al.2021. Directed mutagenesis of β-mannanase gene from Bacillus licheniformis KD-1 for improving enzyme activity and stability[J]. Biotechnology Bulletin, 37(10): 100-109.) [4] 王禹焜, 张斯童, 陈光. 2020. 高效表达内切葡聚糖酶酿酒酵母工程菌的构建[J]. 生物工程学报, 36(10): 2193-2205. (Wang Y K, Zhang S T, Chen G.2020. Construction of an engineered Saccharomyces cerevisiae expressing endoglucanase efficiently[J]. Chinese Journal of Biotechnology, 36(10): 2193-2205.) [5] 吴晓怡, 吴昊, 杨灿, 等. 2024. 蛋白质工程提升糖酶热稳定性研究进展[J]. 食品科学, 45(19): 263-271. (Wu X Y, Wu H, Yang C, et al.2024. Research advances in protein engineering to enhance the thermal stability of glycosidase[J]. Food Science, 45(19): 263-271.) [6] 武亚丽, 张效林, 高丽敏, 等. 2025. 秸秆粉/纤维资源化利用技术进展[J]. 化工进展, 44(6): 3509-3523. (Wu Y L, Zhang X L, Gao L M, et al.2025. Advances in the resource utilization technology of straw powder/fiber[J]. Modern Chemical Industry, 44(6): 3509-3523.) [7] 张超, 李晓意, 杨吉, 等. 2023. 1株耐酸秸秆纤维素降解菌株的筛选、鉴定及其内切葡聚糖酶的异源表达研究[J]. 饲料研究, 46(2): 89-93. (Zhang C, Li X Y, Yang J, et al.2023. Study on screening and identification of an acid-tolerant straw cellulose-degrading bacteria and heterologous expression of endoglucanase[J]. Feed Research, 46(2): 89-93.) [8] Anita S, Somvir B, Arti D, et al.2021. An overview on the recent developments in fungal cellulase production and their industrial applications[J]. Bioresource Technology Reports, 14(1): 100652. [9] Chaudhari Y B, Varnai A, Sorlie M, et al.2023. Engineering cellulases for conversion of lignocellulosic biomass[J]. Protein Engineering, Design and Selection, 36(1): 1-12. [10] Ejaz U, Sohail M, Ghanemi A.2021. Cellulases: From bioactivity to a variety of industrial applications[J]. Biomimetics (Basel, Switzerland), 6(3): 44. [11] Glaser F, Pupko T, Paz I, et al.2003. ConSurf: Identification of functional regions in proteins by surface-mapping of phylogenetic information[J]. Bioinformatics (Oxford, England), 19(1): 163-164. [12] Jiang D, Liu Y, Wu W, et al.2021. Identification and engineering on the nonconserved residues of metallo-β-lactamase-type thioesterase to improve the enzymatic activity[J]. Biotechnology and Bioengineering, 118(12): 4623-4634. [13] Liang J, Du J, Zhang X, et al.2025. Analysis of glucose inhibition characteristics during high-solids enzymatic hydrolysis of pretreated lignocellulose[J]. Industrial Crops and Products, 234(1): 121560. [14] Ohta T, Honie H, Matsuura A, et al.2019. Cloning, expression, and characterization of novel GH5 endoglucanases from Thermobifida alba AHK119[J]. Journal of Bioscience and Bioengineering, 127(5): 554-562. [15] Rahman M S, Fernando S, Ross B, et al.2018. Endoglucanase (EG) activity assays[J]. Methods in Molecular Biology, 1796(1): 169-183. [16] Santos C R, Paiva J H, Sforca M L, et al.2012. Dissecting structure-function-stability relationships of a thermostable GH5-CBM3 cellulase from Bacillus subtilis 168[J]. The Biochemical Journal, 441(1): 95-104. [17] Singh S, Kumar K, Nath P, et al.2020. Role of glycine 256 residue in improving the catalytic efficiency of mutant endoglucanase of family 5 glycoside hydrolase from Bacillus amyloliquefaciens SS35[J]. Biotechnology and Bioengineering, 117(9): 2668-2682. [18] Van Wyk J C, Sewell B T, Danson M J, et al.2022. Engineering enhanced thermostability into the Geobacillus pallidus nitrile hydratase[J]. Current Research in Structural Biology, 4(1): 256-270. [19] Wang J, Chitsaz F, Derbyshire M K, et al.2023. The conserved domain database in 2023[J]. Nucleic Acids Research, 51(D1): D384-D388. [20] Waterhouse A, Bertoni M, Bienert S, et al.2018. SWISS-MODEL: Homology modelling of protein structures and complexes[J]. Nucleic Acids Research, 46(W1): W296-W303. [21] Wu X, Zhao S, Tian Z, et al.2023. Dynamics of loops surrounding the active site architecture in GH5_2 subfamily TfCel5A for cellulose degradation[J]. Biotechnology for Biofuels and Bioproducts, 16(1): 154. [22] Zheng F, Tu T, Wang X, et al.2018. Enhancing the catalytic activity of a novel GH5 cellulase GtCel5 from Gloeophyllum trabeum CBS 900.73 by site-directed mutagenesis on loop 6[J]. Biotechnology for Biofuels, 11(1): 76. [23] Zheng J, Liu H Q, Qin X, et al.2022. Identification and mutation analysis of nonconserved residues on the TIM-Barrel surface of GH5_5 cellulases for catalytic efficiency and stability improvement[J]. Applied and Environmental Microbiology, 88(17): e0104622. [24] Zhu W, Liu Y, Cao H, et al.2025. Short-loop engineering strategy for enhancing enzyme thermal stability[J]. iScience, 28(4): 112202.