|
|
Identification and Functional Study of NF-YB Family Genes in Maize (Zea mays) |
LIU Jian-Han2,*, MA Yu-Xin1,2,*, SUN Yu-Tong2, FAN Zi-Xuan2, XING Ji-Hong1,2,**, ZHANG Kang1,2,** |
1 State Key Laboratory of North China Crop Improvement and Regulation, Hebei Agricultural University, Baoding 071000, China; 2 Hebei Key Laboratory of Plant Physiology and Molecular Pathology, Hebei Agricultural University, Baoding 071000, China |
|
|
Abstract Nuclear transcription factor Y (NF-Y) is composed of 3 subunits, NF-YA, NF-YB, and NF-YC, and can specifically recognize CCAAT-BOX. In order to identify the members of NF-YB family in maize (Zea mays) and analyze their expression patterns in different tissues and physiological conditions, the NF-YB coding genes in maize genome were systematically identified and analyzed by bioinformatics methods. The expression patterns of NF-YB family members under hormone treatment were determined by spraying inbred line B73 plants with salicylic acid, jasmonic acid, and abscisic acid. The results showed that there were 18 members of the maize NF-YB gene family, all of which had NFYB domains and upstream binding sites for salicylic acid, jasmonic acid and abscisic acid. The experiment proved that the expression levels of maize NF-YB family genes increased significantly within 24 h after salicylic acid, jasmonic acid and abscisic acid treatment. It was predicted that NF-YB was involved in salicylic acid, jasmonic acid and abscisic acid pathway. Under cold, heat and UV stresses, the overall expression levels of family genes were down regulated; under salt and drought stress, the overall expression levels of family genes were increased. Under the infection of Fusarium graminearum, the expression levels of Zm00001d042196, Zm00001d010574 and Zm00001d019101 were increased. In this study, the maize NF-YB family genes were systematically identified and analyzed, the members of the maize NF-YB family were clarified, and the expression rules of maize NF- YB family members in maize biotic and abiotic stresses were revealed. This study provides an important theoretical basis for further elucidating the function of this family.
|
Received: 25 March 2022
|
|
Corresponding Authors:
** xingjihong2000@126.com; zk7588@163.com.* These authors contributed equally to this work.
|
|
|
|
[1] 王秋岩, 何淑雅, 马云, 等. 2015. 启动子分析方法的研究进展[J]. 现代生物医学进展 , 15(14): 2794-2800. (Wang Q Y, He S Y, Ma Y,et al. 2015. Advances in analytical methods of promoter[J]. Progress in Modern Biomedicine, 15(14): 2794-2800.) [2] 谢维 .2021. NF-YB2 与 NF-YB3 平衡植物开花时间和免疫应答的分子机制[D]. 硕士学位论文, 浙江大学, 导师: 陶增 , pp. 35. (Xie W. 2021. Molecular mechanism of NF-YB2 and NF-YB3 balancing plant flowering time and immune response[D]. Thesis for M. S., Zhejiang University, supervisor: Tao Z, pp.35.) [3] 周天顺, 余东, 孙志忠, 等. 2018. 水稻转录因子 NF-YB 家族的生物信息学分析[J]. 分子植物育种 , 16(18): 5849-5861. (Zhou T S, Yu D, Sun Z Z, et al. 2018. Bioinformatics analysis of the NF-YB gene family in rice[J]. Molecular Plant Breeding, 16(18): 5849-5861.) [4] Chen Y, Yang Z, Xiao Y, et al. 2018. Genome-wide analysis of the NF-YB gene family in Gossypium hirsutum L. and characterization of the role of GhDNF-YB22 in embryogenesis[J]. International Journal of Molecular Sciences, 19(2): 483. [5] Dai J H, Hu A Q, Zhang J S, et al. 2021. NF-YB-mediated active responses of plant growth under salt and temperature stress in Eucalyptus grandis[J]. Plants, 10(6): 1107. [6] Li M, Li G, Liu W, et al. 2019. Genome-wide analysis of the NF-Y gene family in peach (Prunus persica L.)[J]. BMC Genomics, 20(1): 1-15. [7] Lu H.2009. Dissection of salicylic acid-mediated defense signaling networks[J]. Plant Signaling and Behavior, 4(8): 713-717. [8] Kahle J, Baake M, Doenecke D, et al. 2005. Subunits of the heterotrimeric transcription factor NF-Y are imported into the nucleus by distinct pathways involving importin β and importin 13[J]. Molecular and Cellular Biology, 25(13): 5339-5354. [9] Mach J.2017. Constans companion: CO binds the NF-YB/ NF-YC dimer and confers sequence-specific DNA binding[J]. The Plant Cell, 7(13): 1183. [10] Maheshwari P, Kummari D, Palakolanu S R, et al. 2019. Genome-wide identification and expression profile analysis of nuclear factor Y family genes in Sorghum bicolor L[J]. PLOS ONE, 14(9): e0222203. [11] Nardone V, Chaves-Sanjuan A, Nardini M, et al. 2017.Structural determinants for NF-Y/DNA interaction at the CCAAT box[J]. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms, 1860(5): 571-580. [12] Nelson D E, Repetti P P, Adams T R, et al. 2007. Plant nuclear factor Y (NF-Y) B subunits confer drought tolerance and lead to improved corn yields on water-limited acres[J]. Proceedings of the National Academy of Sciences of the USA, 104(42): 16450-16455. [13] Sardar-Ali K, Li M Z, Wang S M, et al. 2018. Revisiting the role of plant transcription factors in the battle against abiotic stress[J]. International Journal of Molecular Sciences, 19(6): 1634. [14] Sato H, Suzuki T, Takahashi F, et al. 2019. NF-YB2 and NF- YB3 have functionally diverged and differentially induce drought and heat stress-specific genes[J]. Plant Physiology, 180(3): 1677-1690. [15] Seguel A, Jelenska J, Herrera-Vásquez A, et al. 2018.Prohibitin3 forms complexes with isochorismate synthase1 to regulate stress-induced salicylic acid biosynthesis in Arabidopsis[J]. Plant Physiology, 176(3):2515-2531. [16] Shen C, Liu H, Guan Z, et al. 2020. Structural insight into DNA recognition by CCT/NF-YB/YC complexes in plant photoperiodic flowering[J]. Plant Cell, 32(11):3469-3484. [17] Stephenson T J, Mcintyre C L, Collet C, et al. 2007. Genome- wide identification and expression analysis of the NF-Y family of transcription factors in Triticum aestivum[J]. Plant Molecular Biology, 65(1-2): 77-92. [18] Siefers N, Dang K K, Kumimoto R W, et al. 2009. Tissue- specific expression patterns of Arabidopsis NF-Y transcription factors suggest potential for extensive combinatorial complexity[J]. Plant Physiology, 149(2): 625-641. [19] Swain S, Myers Z A, Siriwardana C L, et al. 2017. The multifaceted roles of nuclear factory in Arabidopsis thalianadevelopment and stress responses[J]. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms, 1860(5): 636-644. [20] Warpeha K M, Upadhyay S, Yeh J, et al. 2007. The GCR1, GPA1, PRN1, NF-Y signal chain mediates both blue light and abscisic acid responses in Arabidopsis[J]. Plant Physiology, 143(4): 1590-1600. [21] Wu K, Fang Z, Wang L, et al. 2016. Biological potential of bioorganic fertilizer fortified with bacterial antagonist for the control of tomato bacterial wilt and the promotion of crop yields[J]. Journal of Microbiology and Biotechnology, 26(10): 1755-1764. [22] Zanetti M E, Rípodas C, Niebel A.2017. Plant NF-Y transcription factors: Key players in plant-microbe interactions, root development and adaptation to stress[J]. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms, 1860(5): 645-654. [23] Zhao H, Wu D, Kong F, et al. 2017. The Arabidopsis thaliana nuclear factor Y transcription factors[J]. Frontiers in Plant Science, 7: 2045. [24] Zhang Z, Li X, Zhang C, et al. 2016. Isolation, structural analysis, and expression characteristics of the maize nuclear factor Y gene families[J]. Biochemical and Biophysical Research Communications, 478(2): 752-758. |
|
|
|